Variant report

Variant	rs12026367
Chromosome Location	chr1:94839743-94839744
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1054626	0.95[AFR][1000 genomes]
rs12022859	0.85[ASN][1000 genomes]
rs12024941	1.00[ASN][1000 genomes]
rs12031606	0.98[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12036085	0.93[AFR][1000 genomes]
rs12562103	0.98[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs12563826	0.83[AFR][1000 genomes]
rs1572575	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17111426	0.93[AFR][1000 genomes]
rs56037795	0.98[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6662877	1.00[ASN][1000 genomes]
rs67554381	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs67681803	1.00[ASN][1000 genomes]
rs68193246	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428510	chr1:94709575-94866655	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94834600-94849400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr1:94836000-94841000	Weak transcription	HepG2	liver
3	chr1:94839200-94844800	Weak transcription	Stomach Mucosa	stomach
4	chr1:94839400-94846000	Weak transcription	Fetal Thymus	thymus

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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