Variant report

Variant	rs1572575
Chromosome Location	chr1:94852474-94852475
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1054626	0.89[CHB][hapmap];1.00[YRI][hapmap]
rs12022859	0.88[CHB][hapmap];0.82[YRI][hapmap];0.85[ASN][1000 genomes]
rs12024941	1.00[ASN][1000 genomes]
rs12026367	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12031606	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12562103	0.81[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs16928	0.88[CHB][hapmap]
rs17111419	0.88[CHB][hapmap]
rs17111426	0.88[CHB][hapmap];1.00[YRI][hapmap]
rs17111436	0.88[CHB][hapmap]
rs56037795	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6662877	1.00[ASN][1000 genomes]
rs6675959	0.87[CEU][hapmap]
rs67554381	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs67681803	1.00[ASN][1000 genomes]
rs68193246	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428510	chr1:94709575-94866655	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv871097	chr1:94850443-94941890	Weak transcription Active TSS Enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94846200-94854400	Enhancers	Fetal Intestine Small	intestine
2	chr1:94850000-94854000	Enhancers	Fetal Intestine Large	intestine
3	chr1:94851400-94853000	Weak transcription	Duodenum Mucosa	Duodenum
4	chr1:94851400-94853400	Enhancers	Fetal Thymus	thymus
5	chr1:94851400-94854200	Enhancers	HepG2	liver
6	chr1:94851600-94854800	Weak transcription	Primary T cells from cord blood	blood
7	chr1:94851800-94852600	Weak transcription	Thymus	Thymus
8	chr1:94851800-94852800	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr1:94852200-94853200	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr1:94852400-94853400	Enhancers	Stomach Mucosa	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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