Variant report

Variant	rs67681803
Chromosome Location	chr1:94847789-94847790
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs1054626	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11165103	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11165114	0.91[EUR][1000 genomes]
rs12022859	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12024941	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12026367	1.00[ASN][1000 genomes]
rs12027548	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12031606	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12036085	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12038745	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12039546	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12042509	0.95[EUR][1000 genomes]
rs12046536	0.88[EUR][1000 genomes]
rs12093742	0.85[EUR][1000 genomes]
rs12562103	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12563826	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1360365	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1572575	1.00[ASN][1000 genomes]
rs1576592	0.87[EUR][1000 genomes]
rs1611832	0.90[EUR][1000 genomes]
rs1622451	0.92[EUR][1000 genomes]
rs1623248	0.92[EUR][1000 genomes]
rs1623314	0.92[EUR][1000 genomes]
rs1629275	0.90[EUR][1000 genomes]
rs1687947	0.87[EUR][1000 genomes]
rs1687950	0.88[EUR][1000 genomes]
rs16928	0.91[EUR][1000 genomes]
rs17111408	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17111419	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17111426	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17111436	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1765636	0.92[EUR][1000 genomes]
rs1765640	0.87[EUR][1000 genomes]
rs1999270	0.87[EUR][1000 genomes]
rs1999271	0.87[EUR][1000 genomes]
rs2130899	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2391472	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35275815	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4543802	0.95[EUR][1000 genomes]
rs4847201	0.87[EUR][1000 genomes]
rs4847296	0.85[EUR][1000 genomes]
rs55961421	0.88[EUR][1000 genomes]
rs56037795	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6541343	0.87[EUR][1000 genomes]
rs6541345	0.87[EUR][1000 genomes]
rs6662877	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6673491	0.85[EUR][1000 genomes]
rs6675959	0.87[EUR][1000 genomes]
rs6681827	0.87[EUR][1000 genomes]
rs66918029	0.88[EUR][1000 genomes]
rs66961454	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs67180557	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs67554381	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67612304	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs67807923	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs68193246	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7413345	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7415246	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7515965	0.87[EUR][1000 genomes]
rs7520754	0.85[EUR][1000 genomes]
rs7525320	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7533977	0.87[EUR][1000 genomes]
rs7554714	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428510	chr1:94709575-94866655	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94834600-94849400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr1:94843600-94849200	Enhancers	HepG2	liver
3	chr1:94843800-94849200	Enhancers	Liver	Liver
4	chr1:94845600-94847800	Weak transcription	Fetal Intestine Large	intestine
5	chr1:94846000-94850600	Enhancers	Fetal Thymus	thymus
6	chr1:94846200-94854400	Enhancers	Fetal Intestine Small	intestine
7	chr1:94846600-94850200	Enhancers	Thymus	Thymus
8	chr1:94846600-94851200	Enhancers	Primary hematopoietic stem cells	blood
9	chr1:94846600-94851400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr1:94847000-94849000	Enhancers	Pancreas	Pancrea
11	chr1:94847200-94848400	Enhancers	Primary neutrophils fromperipheralblood	blood
12	chr1:94847200-94848400	Enhancers	Primary hematopoietic stem cells short term culture	blood
13	chr1:94847200-94848600	Enhancers	Dnd41	blood
14	chr1:94847400-94847800	Enhancers	Fetal Lung	lung
15	chr1:94847400-94847800	Flanking Active TSS	A549	lung
16	chr1:94847400-94848000	Enhancers	Primary T cells from cord blood	blood
17	chr1:94847400-94848000	Enhancers	Sigmoid Colon	Sigmoid Colon
18	chr1:94847400-94848200	Enhancers	Rectal Mucosa Donor 29	rectum
19	chr1:94847400-94849200	Enhancers	Duodenum Mucosa	Duodenum
20	chr1:94847400-94850200	Enhancers	Primary T helper cells PMA-I stimulated	--
21	chr1:94847400-94850600	Enhancers	Stomach Mucosa	stomach
22	chr1:94847400-94851800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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