Variant report

Variant	rs1611832
Chromosome Location	chr1:94774673-94774674
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:94764343..94765905-chr1:94774402..94776813,2	K562	blood:

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs1054626	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs11165103	0.90[EUR][1000 genomes]
rs11165114	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12022859	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs12024941	0.90[EUR][1000 genomes]
rs12027548	0.92[EUR][1000 genomes]
rs12031606	0.90[EUR][1000 genomes]
rs12036085	0.92[EUR][1000 genomes]
rs12038745	0.91[EUR][1000 genomes]
rs12039546	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12042509	1.00[CEU][hapmap];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12046536	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs12093742	0.90[EUR][1000 genomes]
rs12562103	0.94[EUR][1000 genomes]
rs12563826	0.92[EUR][1000 genomes]
rs1360365	0.90[EUR][1000 genomes]
rs1576592	0.88[EUR][1000 genomes]
rs1622451	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1623248	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1623314	1.00[CEU][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1629275	0.91[EUR][1000 genomes]
rs1687947	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs1687950	0.90[EUR][1000 genomes]
rs16928	1.00[CEU][hapmap];0.96[YRI][hapmap];0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17111408	0.92[EUR][1000 genomes]
rs17111419	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs17111426	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs17111436	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs1765636	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1765640	1.00[CEU][hapmap];0.93[YRI][hapmap];0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1929131	0.87[CEU][hapmap]
rs1999270	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs1999271	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs2130899	0.94[EUR][1000 genomes]
rs2391472	0.90[EUR][1000 genomes]
rs35275815	0.88[EUR][1000 genomes]
rs4543802	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4847201	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs4847296	0.90[EUR][1000 genomes]
rs55961421	0.87[EUR][1000 genomes]
rs56037795	0.90[EUR][1000 genomes]
rs6541343	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs6541345	0.88[EUR][1000 genomes]
rs6662877	0.92[EUR][1000 genomes]
rs6673491	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs6675959	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs6681827	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs66918029	0.87[EUR][1000 genomes]
rs66961454	0.94[EUR][1000 genomes]
rs67180557	0.94[EUR][1000 genomes]
rs67554381	0.88[EUR][1000 genomes]
rs67612304	0.94[EUR][1000 genomes]
rs67681803	0.90[EUR][1000 genomes]
rs67807923	0.95[EUR][1000 genomes]
rs68193246	0.94[EUR][1000 genomes]
rs7413345	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7415246	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7515965	0.88[EUR][1000 genomes]
rs7520754	0.90[EUR][1000 genomes]
rs7525320	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7533977	0.88[EUR][1000 genomes]
rs7554714	1.00[CEU][hapmap];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428510	chr1:94709575-94866655	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94763400-94775800	Weak transcription	Psoas Muscle	Psoas
2	chr1:94766600-94775600	Weak transcription	Small Intestine	intestine
3	chr1:94767200-94775400	Weak transcription	Liver	Liver
4	chr1:94768200-94774800	Weak transcription	Spleen	Spleen
5	chr1:94768400-94775800	Weak transcription	Pancreas	Pancrea
6	chr1:94771800-94775600	Weak transcription	NHLF	lung
7	chr1:94771800-94775800	Weak transcription	Left Ventricle	heart
8	chr1:94772000-94774800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr1:94772000-94775800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr1:94772000-94776800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr1:94772000-94780600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr1:94772000-94781400	Weak transcription	Osteobl	bone
13	chr1:94772200-94775600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr1:94772800-94775600	Weak transcription	NHDF-Ad	bronchial
15	chr1:94772800-94776800	Weak transcription	Fetal Muscle Leg	muscle
16	chr1:94773200-94775600	Weak transcription	HUVEC	blood vessel
17	chr1:94773800-94774800	Enhancers	HepG2	liver
18	chr1:94774200-94774800	Enhancers	Ovary	ovary
19	chr1:94774200-94775400	Enhancers	Fetal Heart	heart
20	chr1:94774200-94775600	Weak transcription	Primary neutrophils fromperipheralblood	blood
21	chr1:94774200-94775800	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr1:94774400-94774800	Weak transcription	Right Ventricle	heart
23	chr1:94774400-94774800	Enhancers	A549	lung
24	chr1:94774400-94775800	Weak transcription	Primary monocytes fromperipheralblood	blood
25	chr1:94774400-94775800	Weak transcription	Monocytes-CD14+_RO01746	blood
26	chr1:94774600-94775000	Enhancers	Fetal Lung	lung
27	chr1:94774600-94775600	Weak transcription	Gastric	stomach
28	chr1:94774600-94775800	Weak transcription	Lung	lung
29	chr1:94774600-94775800	Weak transcription	Right Atrium	heart
30	chr1:94774600-94787800	Weak transcription	Aorta	Aorta

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