Variant report

Variant	rs35275815
Chromosome Location	chr1:94719275-94719276
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:94373532..94375342-chr1:94718198..94720143,2	K562	blood:
2	chr1:94712698..94714199-chr1:94716914..94719341,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000231363	Chromatin interaction
ENSG00000023909	Chromatin interaction

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs1054626	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11165103	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11165114	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12022859	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12024941	0.90[EUR][1000 genomes]
rs12027548	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12031606	0.90[EUR][1000 genomes]
rs12036085	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12038745	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12039546	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12042509	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12046536	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12093742	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12562103	0.94[EUR][1000 genomes]
rs12563826	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1360365	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1576592	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1611832	0.88[EUR][1000 genomes]
rs1622451	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1623248	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1623314	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1629275	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1687947	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1687950	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16928	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17111408	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17111419	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17111426	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17111436	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1765636	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1765640	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1929131	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1999270	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1999271	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2130899	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2391472	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3789690	0.89[EUR][1000 genomes]
rs4543802	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4847201	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4847296	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55961421	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56037795	0.90[EUR][1000 genomes]
rs57666908	0.89[EUR][1000 genomes]
rs6541343	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6541345	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6662877	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6673491	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6675959	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6681827	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs66918029	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs66961454	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs67180557	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs67554381	0.88[EUR][1000 genomes]
rs67612304	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs67681803	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs67807923	0.92[EUR][1000 genomes]
rs68193246	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7413345	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7415246	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7515965	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7520754	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7525320	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7533977	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7554714	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428510	chr1:94709575-94866655	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94713600-94722800	Weak transcription	Gastric	stomach
2	chr1:94714000-94719800	Weak transcription	Adipose Nuclei	Adipose
3	chr1:94714000-94719800	Weak transcription	NHDF-Ad	bronchial
4	chr1:94714600-94724000	Weak transcription	A549	lung
5	chr1:94714800-94719600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr1:94714800-94719800	Weak transcription	NH-A	brain
7	chr1:94714800-94721200	Weak transcription	HSMM	muscle
8	chr1:94715000-94719800	Weak transcription	Osteobl	bone
9	chr1:94716000-94719600	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr1:94716200-94719800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr1:94716200-94719800	Weak transcription	NHEK	skin
12	chr1:94716200-94720000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr1:94716200-94720000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr1:94716400-94720000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr1:94716400-94720000	Weak transcription	HMEC	breast
16	chr1:94716600-94724000	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr1:94718400-94724200	Weak transcription	HepG2	liver
18	chr1:94718800-94719800	Weak transcription	Stomach Mucosa	stomach
19	chr1:94719000-94719400	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
20	chr1:94719000-94720000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr1:94719200-94719400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr1:94719200-94719400	Enhancers	Pancreas	Pancrea
23	chr1:94719200-94721000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr1:94719200-94721800	Enhancers	HUVEC	blood vessel

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