Variant report

Variant	rs1929131
Chromosome Location	chr1:94691662-94691663
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:94686809..94688438-chr1:94690096..94692408,2	K562	blood:
2	chr1:94691093..94693405-chr1:94702340..94704555,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000137962	Chromatin interaction

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs1054626	0.87[CEU][hapmap];0.89[CHB][hapmap];0.89[JPT][hapmap];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11165103	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11165114	0.81[EUR][1000 genomes]
rs12022859	0.86[CEU][hapmap];0.89[CHB][hapmap];0.82[EUR][1000 genomes]
rs12027548	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12036085	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12038745	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12039546	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12042509	0.87[CEU][hapmap];0.82[EUR][1000 genomes]
rs12046536	0.87[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12093742	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12562103	0.82[EUR][1000 genomes]
rs12563826	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1360365	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1576592	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1622451	0.82[EUR][1000 genomes]
rs1623248	0.82[EUR][1000 genomes]
rs1623314	0.87[CEU][hapmap];0.82[EUR][1000 genomes]
rs1629275	0.81[AFR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1687947	0.86[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.87[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1687950	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16928	0.86[CEU][hapmap];0.89[CHB][hapmap];0.81[EUR][1000 genomes]
rs17111408	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17111419	0.86[CEU][hapmap];0.89[CHB][hapmap];0.88[JPT][hapmap];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17111426	0.86[CEU][hapmap];0.89[CHB][hapmap];0.88[JPT][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17111436	0.86[CEU][hapmap];0.89[CHB][hapmap];0.88[JPT][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1765636	0.82[EUR][1000 genomes]
rs1765640	0.87[CEU][hapmap]
rs1999270	0.86[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1999271	0.87[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2130899	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2391472	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35275815	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3789690	0.81[EUR][1000 genomes]
rs4543802	0.82[EUR][1000 genomes]
rs4847201	0.87[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4847296	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55961421	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57666908	0.81[EUR][1000 genomes]
rs6541343	0.86[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6541345	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6662877	0.81[EUR][1000 genomes]
rs6673491	0.86[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.83[YRI][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6675959	0.87[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6681827	0.87[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs66918029	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs66961454	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs67180557	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs67612304	0.82[EUR][1000 genomes]
rs67807923	0.81[EUR][1000 genomes]
rs68193246	0.82[EUR][1000 genomes]
rs7413345	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7415246	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7515965	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7520754	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7525320	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7533977	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7554714	0.87[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94668800-94699000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr1:94673800-94698600	Weak transcription	Fetal Muscle Trunk	muscle
3	chr1:94673800-94701000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr1:94674000-94697000	Weak transcription	HSMMtube	muscle
5	chr1:94684800-94692800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr1:94684800-94698600	Weak transcription	Left Ventricle	heart
7	chr1:94685000-94691800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr1:94685000-94692000	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr1:94685000-94701000	Weak transcription	Right Ventricle	heart
10	chr1:94685200-94691800	Weak transcription	Adipose Nuclei	Adipose
11	chr1:94685200-94696800	Weak transcription	HepG2	liver
12	chr1:94685200-94700600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr1:94685200-94700800	Weak transcription	NHLF	lung
14	chr1:94685200-94701000	Weak transcription	Psoas Muscle	Psoas
15	chr1:94685400-94697400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr1:94685600-94696000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr1:94685800-94693800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr1:94685800-94699400	Weak transcription	Fetal Muscle Leg	muscle
19	chr1:94688000-94693200	Weak transcription	A549	lung
20	chr1:94688000-94694600	Weak transcription	HMEC	breast
21	chr1:94688200-94694200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr1:94688400-94694400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr1:94688600-94694600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr1:94689800-94691800	Weak transcription	Osteobl	bone
25	chr1:94689800-94692000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr1:94690000-94691800	Weak transcription	NHEK	skin
27	chr1:94690400-94693600	Genic enhancers	HUVEC	blood vessel
28	chr1:94690400-94696400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr1:94691000-94692000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr1:94691000-94692000	Weak transcription	Skeletal Muscle Male	skeletal muscle
31	chr1:94691000-94692000	Weak transcription	NHDF-Ad	bronchial
32	chr1:94691200-94692600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr1:94691400-94691800	Enhancers	Fetal Heart	heart
34	chr1:94691400-94692600	Enhancers	Muscle Satellite Cultured Cells	--
35	chr1:94691400-94693800	Enhancers	Liver	Liver
36	chr1:94691600-94692200	Enhancers	NH-A	brain
37	chr1:94691600-94692600	Weak transcription	Pancreatic Islets	Pancreatic Islet
38	chr1:94691600-94696200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr1:94691600-94696400	Weak transcription	HSMM	muscle

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