Variant report

Variant	rs6675959
Chromosome Location	chr1:94699118-94699119
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:94692312..94694422-chr1:94696835..94699203,2	MCF-7	breast:

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs1054626	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11165103	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11165114	0.90[EUR][1000 genomes]
rs12022859	1.00[CEU][hapmap];0.89[CHB][hapmap];0.86[JPT][hapmap];0.91[EUR][1000 genomes]
rs12024941	0.87[EUR][1000 genomes]
rs12027548	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12031606	0.87[EUR][1000 genomes]
rs12036085	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12038745	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12039546	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12042509	1.00[CEU][hapmap];0.80[CHB][hapmap];0.89[JPT][hapmap];0.91[EUR][1000 genomes]
rs12046536	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12093742	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12562103	0.91[EUR][1000 genomes]
rs12563826	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1360365	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1576592	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1611832	0.88[EUR][1000 genomes]
rs1622451	0.91[EUR][1000 genomes]
rs1623248	0.91[EUR][1000 genomes]
rs1623314	1.00[CEU][hapmap];0.80[CHB][hapmap];0.89[JPT][hapmap];0.91[EUR][1000 genomes]
rs1629275	0.81[AFR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1687947	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1687950	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16928	1.00[CEU][hapmap];0.89[CHB][hapmap];0.88[JPT][hapmap];0.90[EUR][1000 genomes]
rs17111408	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17111419	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17111426	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17111436	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1765636	0.91[EUR][1000 genomes]
rs1765640	1.00[CEU][hapmap];0.80[CHB][hapmap];0.89[JPT][hapmap];0.86[EUR][1000 genomes]
rs1929131	0.87[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1999270	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1999271	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2130899	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2391472	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35275815	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3789690	0.89[EUR][1000 genomes]
rs4543802	0.91[EUR][1000 genomes]
rs4847201	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4847296	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55961421	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56037795	0.87[EUR][1000 genomes]
rs57666908	0.89[EUR][1000 genomes]
rs6541343	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6541345	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6662877	0.90[EUR][1000 genomes]
rs6673491	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6681827	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66918029	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66961454	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs67180557	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs67554381	0.88[EUR][1000 genomes]
rs67612304	0.91[EUR][1000 genomes]
rs67681803	0.87[EUR][1000 genomes]
rs67807923	0.90[EUR][1000 genomes]
rs68193246	0.91[EUR][1000 genomes]
rs7413345	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7415246	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7515965	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7520754	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7525320	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7533977	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7554714	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94673800-94701000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr1:94685000-94701000	Weak transcription	Right Ventricle	heart
3	chr1:94685200-94700600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr1:94685200-94700800	Weak transcription	NHLF	lung
5	chr1:94685200-94701000	Weak transcription	Psoas Muscle	Psoas
6	chr1:94685800-94699400	Weak transcription	Fetal Muscle Leg	muscle
7	chr1:94692600-94700200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr1:94694800-94699400	Weak transcription	Stomach Mucosa	stomach
9	chr1:94696200-94701200	Enhancers	Fetal Heart	heart
10	chr1:94696400-94699400	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr1:94696400-94700400	Enhancers	A549	lung
12	chr1:94696800-94699600	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr1:94697000-94701400	Flanking Active TSS	HUVEC	blood vessel
14	chr1:94697200-94699200	Enhancers	NHEK	skin
15	chr1:94697200-94699600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr1:94697200-94700200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr1:94697200-94700200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr1:94697400-94700800	Weak transcription	HSMMtube	muscle
19	chr1:94697600-94699200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr1:94697800-94699400	Weak transcription	Adipose Nuclei	Adipose
21	chr1:94698000-94699200	Enhancers	Muscle Satellite Cultured Cells	--
22	chr1:94698000-94699200	Weak transcription	HMEC	breast
23	chr1:94698000-94699400	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr1:94698200-94699200	Weak transcription	HSMM	muscle
25	chr1:94698200-94699400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr1:94698200-94702800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr1:94698400-94699200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr1:94698400-94699400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr1:94698600-94699400	Enhancers	HUES48 Cell Line	embryonic stem cell
30	chr1:94698800-94699200	Weak transcription	NH-A	brain
31	chr1:94698800-94699400	Enhancers	Osteobl	bone
32	chr1:94698800-94700200	Enhancers	Liver	Liver
33	chr1:94698800-94700800	Enhancers	HepG2	liver
34	chr1:94698800-94701000	Weak transcription	Fetal Muscle Trunk	muscle
35	chr1:94699000-94699200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr1:94699000-94699200	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
37	chr1:94699000-94699200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr1:94699000-94699200	Flanking Active TSS	NHDF-Ad	bronchial
39	chr1:94699000-94699400	Enhancers	HUES64 Cell Line	embryonic stem cell
40	chr1:94699000-94699400	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
41	chr1:94699000-94699400	Enhancers	iPS-20b Cell Line	embryonic stem cell
42	chr1:94699000-94699600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr1:94699000-94699800	Enhancers	H9 Cell Line	embryonic stem cell
44	chr1:94699000-94699800	Enhancers	HUES6 Cell Line	embryonic stem cell
45	chr1:94699000-94699800	Enhancers	iPS-15b Cell Line	embryonic stem cell
46	chr1:94699000-94700000	Enhancers	Skeletal Muscle Male	skeletal muscle
47	chr1:94699000-94701200	Weak transcription	Left Ventricle	heart

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