Variant report

Variant	rs67554381
Chromosome Location	chr1:94859632-94859633
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:94851431..94853630-chr1:94859624..94862192,2	K562	blood:
2	chr1:94851431..94853630-chr1:94859546..94862192,3	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ARHGAP29-6	chr1:94859295-94860100	NONHSAT004590

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs1054626	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11165103	0.89[EUR][1000 genomes]
rs11165114	0.89[EUR][1000 genomes]
rs12022859	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12024941	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12026367	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12027548	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12031606	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12036085	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12038745	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12039546	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12042509	0.94[EUR][1000 genomes]
rs12046536	0.89[EUR][1000 genomes]
rs12093742	0.87[EUR][1000 genomes]
rs12562103	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12563826	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1360365	0.89[EUR][1000 genomes]
rs1572575	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1576592	0.88[EUR][1000 genomes]
rs1611832	0.88[EUR][1000 genomes]
rs1622451	0.91[EUR][1000 genomes]
rs1623248	0.91[EUR][1000 genomes]
rs1623314	0.91[EUR][1000 genomes]
rs1629275	0.88[EUR][1000 genomes]
rs1687947	0.88[EUR][1000 genomes]
rs1687950	0.87[EUR][1000 genomes]
rs16928	0.89[EUR][1000 genomes]
rs17111408	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17111419	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17111426	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17111436	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1765636	0.91[EUR][1000 genomes]
rs1765640	0.85[EUR][1000 genomes]
rs1999270	0.88[EUR][1000 genomes]
rs1999271	0.88[EUR][1000 genomes]
rs2130899	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2391472	0.89[EUR][1000 genomes]
rs35275815	0.88[EUR][1000 genomes]
rs3789690	0.81[EUR][1000 genomes]
rs4543802	0.94[EUR][1000 genomes]
rs4847201	0.88[EUR][1000 genomes]
rs4847296	0.87[EUR][1000 genomes]
rs55961421	0.89[EUR][1000 genomes]
rs56037795	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57666908	0.81[EUR][1000 genomes]
rs6541343	0.88[EUR][1000 genomes]
rs6541345	0.88[EUR][1000 genomes]
rs6662877	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6673491	0.87[EUR][1000 genomes]
rs6675959	0.88[EUR][1000 genomes]
rs6681827	0.88[EUR][1000 genomes]
rs66918029	0.89[EUR][1000 genomes]
rs66961454	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs67180557	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs67612304	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs67681803	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67807923	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs68193246	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7413345	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7415246	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7515965	0.88[EUR][1000 genomes]
rs7520754	0.87[EUR][1000 genomes]
rs7525320	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7533977	0.88[EUR][1000 genomes]
rs7554714	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428510	chr1:94709575-94866655	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv871097	chr1:94850443-94941890	Weak transcription Active TSS Enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94857400-94859800	Weak transcription	HepG2	liver
2	chr1:94859400-94860200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr1:94859400-94861800	Enhancers	Fetal Thymus	thymus

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