Variant report

Variant	rs4847201
Chromosome Location	chr1:94695168-94695169
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:94502816..94505360-chr1:94694750..94697690,2	MCF-7	breast:
2	chr1:94693083..94695209-chr1:94701584..94703988,3	MCF-7	breast:
3	chr1:94694558..94696485-chr1:94701591..94703832,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000137962	Chromatin interaction

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs1054626	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11165103	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11165114	0.90[EUR][1000 genomes]
rs12022859	1.00[CEU][hapmap];0.89[CHB][hapmap];0.86[JPT][hapmap];0.91[EUR][1000 genomes]
rs12024941	0.87[EUR][1000 genomes]
rs12027548	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12031606	0.87[EUR][1000 genomes]
rs12036085	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12038745	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12039546	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12042509	1.00[CEU][hapmap];0.80[CHB][hapmap];0.89[JPT][hapmap];0.91[EUR][1000 genomes]
rs12046536	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12093742	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12562103	0.91[EUR][1000 genomes]
rs12563826	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1360365	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1576592	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1611832	0.88[EUR][1000 genomes]
rs1622451	0.91[EUR][1000 genomes]
rs1623248	0.91[EUR][1000 genomes]
rs1623314	1.00[CEU][hapmap];0.80[CHB][hapmap];0.89[JPT][hapmap];0.91[EUR][1000 genomes]
rs1629275	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1687947	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1687950	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16928	1.00[CEU][hapmap];0.89[CHB][hapmap];0.88[JPT][hapmap];0.90[EUR][1000 genomes]
rs17111408	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17111419	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17111426	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17111436	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1765636	0.91[EUR][1000 genomes]
rs1765640	1.00[CEU][hapmap];0.80[CHB][hapmap];0.89[JPT][hapmap];0.86[EUR][1000 genomes]
rs1929131	0.87[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1999270	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1999271	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2130899	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2391472	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35275815	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3789690	0.89[EUR][1000 genomes]
rs4543802	0.91[EUR][1000 genomes]
rs4847296	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55961421	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56037795	0.87[EUR][1000 genomes]
rs57666908	0.89[EUR][1000 genomes]
rs6541343	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6541345	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6662877	0.90[EUR][1000 genomes]
rs6673491	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6675959	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6681827	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66918029	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66961454	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs67180557	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs67554381	0.88[EUR][1000 genomes]
rs67612304	0.91[EUR][1000 genomes]
rs67681803	0.87[EUR][1000 genomes]
rs67807923	0.90[EUR][1000 genomes]
rs68193246	0.91[EUR][1000 genomes]
rs7413345	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7415246	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7515965	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7520754	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7525320	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7533977	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7554714	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94668800-94699000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr1:94673800-94698600	Weak transcription	Fetal Muscle Trunk	muscle
3	chr1:94673800-94701000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr1:94674000-94697000	Weak transcription	HSMMtube	muscle
5	chr1:94684800-94698600	Weak transcription	Left Ventricle	heart
6	chr1:94685000-94701000	Weak transcription	Right Ventricle	heart
7	chr1:94685200-94696800	Weak transcription	HepG2	liver
8	chr1:94685200-94700600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr1:94685200-94700800	Weak transcription	NHLF	lung
10	chr1:94685200-94701000	Weak transcription	Psoas Muscle	Psoas
11	chr1:94685400-94697400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr1:94685600-94696000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr1:94685800-94699400	Weak transcription	Fetal Muscle Leg	muscle
14	chr1:94690400-94696400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr1:94691600-94696200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr1:94691600-94696400	Weak transcription	HSMM	muscle
17	chr1:94692200-94696600	Weak transcription	NH-A	brain
18	chr1:94692600-94695600	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr1:94692600-94700200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr1:94693200-94695200	Enhancers	Osteobl	bone
21	chr1:94693400-94695200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr1:94693400-94696400	Weak transcription	Pancreatic Islets	Pancreatic Islet
23	chr1:94693600-94696800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr1:94693600-94697000	Enhancers	HUVEC	blood vessel
25	chr1:94694000-94695200	Enhancers	Fetal Heart	heart
26	chr1:94694000-94695200	Strong transcription	NHEK	skin
27	chr1:94694200-94695200	Enhancers	Liver	Liver
28	chr1:94694200-94696800	Enhancers	Muscle Satellite Cultured Cells	--
29	chr1:94694400-94697200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr1:94694400-94698400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr1:94694600-94695200	Enhancers	HMEC	breast
32	chr1:94694600-94695800	Weak transcription	Adipose Nuclei	Adipose
33	chr1:94694800-94696200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr1:94694800-94696200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr1:94694800-94696400	Weak transcription	Skeletal Muscle Female	skeletal muscle
36	chr1:94694800-94696400	Weak transcription	A549	lung
37	chr1:94694800-94696800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr1:94694800-94699400	Weak transcription	Stomach Mucosa	stomach
39	chr1:94695000-94696600	Weak transcription	NHDF-Ad	bronchial

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