Variant report

Variant	rs1765636
Chromosome Location	chr1:94801069-94801070
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:94526896..94527583-chr1:94801063..94802005,6	MCF-7	breast:
2	chr1:94526845..94527802-chr1:94800794..94801678,4	MCF-7	breast:
3	chr1:94510338..94511868-chr1:94800755..94802089,7	MCF-7	breast:
4	chr1:94491288..94492196-chr1:94801066..94801975,3	MCF-7	breast:
5	chr1:94526846..94527709-chr1:94801055..94802096,8	K562	blood:

Variant related genes	Relation type
ENSG00000198691	Chromatin interaction

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs1054626	0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11165103	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11165114	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12022859	0.97[EUR][1000 genomes]
rs12024941	0.92[EUR][1000 genomes]
rs12027548	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12031606	0.92[EUR][1000 genomes]
rs12036085	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12038745	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12039546	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12042509	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12046536	0.89[EUR][1000 genomes]
rs12093742	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12562103	0.97[EUR][1000 genomes]
rs12563826	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1360365	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1576592	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1611832	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1622451	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1623248	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1623314	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1629275	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1687947	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1687950	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16928	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17111408	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17111419	0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17111426	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17111436	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1765640	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1929131	0.82[EUR][1000 genomes]
rs1999270	0.91[EUR][1000 genomes]
rs1999271	0.91[EUR][1000 genomes]
rs2130899	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2391472	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35275815	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3789690	0.81[EUR][1000 genomes]
rs4543802	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4847201	0.91[EUR][1000 genomes]
rs4847296	0.93[EUR][1000 genomes]
rs55961421	0.89[EUR][1000 genomes]
rs56037795	0.92[EUR][1000 genomes]
rs57666908	0.81[EUR][1000 genomes]
rs6541343	0.91[EUR][1000 genomes]
rs6541345	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6662877	0.95[EUR][1000 genomes]
rs6673491	0.93[EUR][1000 genomes]
rs6675959	0.91[EUR][1000 genomes]
rs6681827	0.91[EUR][1000 genomes]
rs66918029	0.89[EUR][1000 genomes]
rs66961454	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs67180557	0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs67554381	0.91[EUR][1000 genomes]
rs67612304	0.97[EUR][1000 genomes]
rs67681803	0.92[EUR][1000 genomes]
rs67807923	0.98[EUR][1000 genomes]
rs68193246	0.97[EUR][1000 genomes]
rs7413345	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7415246	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7515965	0.91[EUR][1000 genomes]
rs7520754	0.93[EUR][1000 genomes]
rs7525320	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7533977	0.91[EUR][1000 genomes]
rs7554714	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428510	chr1:94709575-94866655	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94796000-94804600	Weak transcription	Fetal Thymus	thymus
2	chr1:94796000-94804800	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr1:94796000-94807800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr1:94796600-94804800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr1:94798200-94801400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr1:94798200-94802000	Enhancers	Osteobl	bone
7	chr1:94798200-94802400	Enhancers	Muscle Satellite Cultured Cells	--
8	chr1:94798400-94801200	Enhancers	A549	lung
9	chr1:94798400-94801200	Enhancers	HSMM	muscle
10	chr1:94798400-94801400	Enhancers	HMEC	breast
11	chr1:94798600-94801200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr1:94798600-94801200	Enhancers	NHLF	lung
13	chr1:94799000-94805200	Weak transcription	Lung	lung
14	chr1:94799200-94801200	Weak transcription	NHEK	skin
15	chr1:94799200-94812000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr1:94800000-94801200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr1:94800000-94804800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr1:94800200-94801200	Enhancers	HUES6 Cell Line	embryonic stem cell
19	chr1:94800200-94801400	Enhancers	Fetal Heart	heart
20	chr1:94800200-94801400	Enhancers	Fetal Kidney	kidney
21	chr1:94800200-94801600	Enhancers	Placenta Amnion	Placenta Amnion
22	chr1:94800200-94801600	Enhancers	Rectal Smooth Muscle	rectum
23	chr1:94800400-94801400	Enhancers	ES-I3 Cell Line	embryonic stem cell
24	chr1:94800400-94801600	Enhancers	Skeletal Muscle Male	skeletal muscle
25	chr1:94800600-94801400	Enhancers	Adipose Nuclei	Adipose
26	chr1:94800800-94801200	Enhancers	HUES64 Cell Line	embryonic stem cell
27	chr1:94800800-94801200	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
28	chr1:94800800-94801200	Enhancers	Duodenum Smooth Muscle	Duodenum
29	chr1:94800800-94801400	Enhancers	Stomach Smooth Muscle	stomach
30	chr1:94800800-94801600	Enhancers	Liver	Liver
31	chr1:94800800-94802000	Enhancers	HUVEC	blood vessel
32	chr1:94801000-94801200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
33	chr1:94801000-94801200	Enhancers	GM12878-XiMat	blood
34	chr1:94801000-94801600	Weak transcription	Placenta	Placenta
35	chr1:94801000-94802200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr1:94801000-94802800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr1:94801000-94804800	Weak transcription	HepG2	liver

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