Variant report

Variant	rs7415246
Chromosome Location	chr1:94758466-94758467
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs1054626	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11165103	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11165114	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12022859	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12024941	0.92[EUR][1000 genomes]
rs12027548	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12031606	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12036085	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12038745	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12039546	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12042509	0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12046536	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12093742	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12562103	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12563826	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1360365	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1576592	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1611832	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1622451	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1623248	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1623314	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1629275	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1687947	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1687950	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16928	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17111408	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17111419	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17111426	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17111436	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1765636	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1765640	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1929131	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1999270	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1999271	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2130899	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2391472	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35275815	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3789690	0.86[EUR][1000 genomes]
rs4543802	0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4847201	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4847296	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55961421	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56037795	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs57666908	0.86[EUR][1000 genomes]
rs6541343	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6541345	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6662877	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6673491	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6675959	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6681827	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs66918029	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs66961454	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs67180557	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs67554381	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs67612304	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs67681803	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs67807923	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs68193246	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7413345	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7515965	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7520754	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7525320	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7533977	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7554714	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428510	chr1:94709575-94866655	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94752600-94765200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr1:94753000-94758800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr1:94758200-94758600	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr1:94758200-94759600	Enhancers	Lung	lung
5	chr1:94758400-94759200	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr1:94758400-94759600	Enhancers	HepG2	liver

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