Variant report

Variant	rs12093742
Chromosome Location	chr1:94705635-94705636
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr1:94705408-94705644	MCF10A-Er-Src	breast:	n/a	chr1:94705535-94705543 chr1:94705533-94705544 chr1:94705535-94705542
2	POLR2A	chr1:94700194-94705855	PANC-1	pancreas:	n/a	n/a
3	POLR2A	chr1:94705388-94705804	HCT-116	colon:	n/a	n/a
4	FOS	chr1:94705380-94705726	HUVEC	blood vessel:	n/a	chr1:94705391-94705403 chr1:94705535-94705543 chr1:94705533-94705544 chr1:94705535-94705542

Variant related genes	Relation type
ARHGAP29	TF binding region

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs1054626	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11165103	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11165114	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12022859	0.90[EUR][1000 genomes]
rs12024941	0.85[EUR][1000 genomes]
rs12027548	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12031606	0.85[EUR][1000 genomes]
rs12036085	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12038745	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12039546	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12042509	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12046536	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12562103	0.90[EUR][1000 genomes]
rs12563826	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1360365	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1576592	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1611832	0.90[EUR][1000 genomes]
rs1622451	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1623248	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1623314	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1629275	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1687947	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1687950	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16928	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17111408	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17111419	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17111426	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17111436	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1765636	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1765640	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1929131	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1999270	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1999271	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2130899	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2391472	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35275815	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3789690	0.88[EUR][1000 genomes]
rs4543802	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4847201	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4847296	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55961421	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56037795	0.85[EUR][1000 genomes]
rs57666908	0.88[EUR][1000 genomes]
rs6541343	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6541345	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6662877	0.88[EUR][1000 genomes]
rs6673491	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6675959	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6681827	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs66918029	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs66961454	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs67180557	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs67554381	0.87[EUR][1000 genomes]
rs67612304	0.90[EUR][1000 genomes]
rs67681803	0.85[EUR][1000 genomes]
rs67807923	0.91[EUR][1000 genomes]
rs68193246	0.90[EUR][1000 genomes]
rs7413345	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7415246	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7515965	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7520754	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7525320	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7533977	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7554714	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94703200-94706400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr1:94703600-94705800	Enhancers	HMEC	breast
3	chr1:94703600-94709000	Enhancers	HUVEC	blood vessel
4	chr1:94703600-94712000	Weak transcription	HSMM	muscle
5	chr1:94703800-94705800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr1:94703800-94705800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr1:94704000-94705800	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr1:94704000-94709000	Weak transcription	Liver	Liver
9	chr1:94704200-94705800	Enhancers	NHEK	skin
10	chr1:94704200-94706000	Enhancers	Osteobl	bone
11	chr1:94704200-94706200	Weak transcription	HepG2	liver
12	chr1:94704600-94705800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr1:94704600-94705800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr1:94704800-94705800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr1:94704800-94706600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr1:94704800-94711400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr1:94705000-94705800	Enhancers	A549	lung
18	chr1:94705000-94706000	Enhancers	NHDF-Ad	bronchial
19	chr1:94705400-94705800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr1:94705400-94705800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
21	chr1:94705400-94705800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
22	chr1:94705400-94706000	Enhancers	NH-A	brain
23	chr1:94705400-94709800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr1:94705600-94705800	Enhancers	Left Ventricle	heart
25	chr1:94705600-94705800	Enhancers	Psoas Muscle	Psoas
26	chr1:94705600-94706400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links