Variant report

Variant	rs6662877
Chromosome Location	chr1:94835883-94835884
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs1054626	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11165103	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11165114	0.94[EUR][1000 genomes]
rs12022859	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12024941	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12026367	1.00[ASN][1000 genomes]
rs12027548	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12031606	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12036085	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12038745	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12039546	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12042509	0.98[EUR][1000 genomes]
rs12046536	0.91[EUR][1000 genomes]
rs12093742	0.88[EUR][1000 genomes]
rs12562103	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12563826	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1360365	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1572575	1.00[ASN][1000 genomes]
rs1576592	0.90[EUR][1000 genomes]
rs1611832	0.92[EUR][1000 genomes]
rs1622451	0.95[EUR][1000 genomes]
rs1623248	0.95[EUR][1000 genomes]
rs1623314	0.95[EUR][1000 genomes]
rs1629275	0.92[EUR][1000 genomes]
rs1687947	0.90[EUR][1000 genomes]
rs1687950	0.91[EUR][1000 genomes]
rs16928	0.94[EUR][1000 genomes]
rs17111408	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17111419	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17111426	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17111436	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1765636	0.95[EUR][1000 genomes]
rs1765640	0.90[EUR][1000 genomes]
rs1929131	0.81[EUR][1000 genomes]
rs1999270	0.90[EUR][1000 genomes]
rs1999271	0.90[EUR][1000 genomes]
rs2130899	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2391472	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35275815	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3789690	0.82[EUR][1000 genomes]
rs4543802	0.98[EUR][1000 genomes]
rs4847201	0.90[EUR][1000 genomes]
rs4847296	0.88[EUR][1000 genomes]
rs55961421	0.91[EUR][1000 genomes]
rs56037795	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57666908	0.82[EUR][1000 genomes]
rs6541343	0.90[EUR][1000 genomes]
rs6541345	0.90[EUR][1000 genomes]
rs6673491	0.88[EUR][1000 genomes]
rs6675959	0.90[EUR][1000 genomes]
rs6681827	0.90[EUR][1000 genomes]
rs66918029	0.91[EUR][1000 genomes]
rs66961454	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs67180557	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs67554381	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67612304	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs67681803	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67807923	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs68193246	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7413345	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7415246	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7515965	0.90[EUR][1000 genomes]
rs7520754	0.88[EUR][1000 genomes]
rs7525320	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7533977	0.90[EUR][1000 genomes]
rs7554714	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428510	chr1:94709575-94866655	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94834600-94849400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr1:94835400-94836000	Enhancers	HepG2	liver
3	chr1:94835800-94836000	Flanking Active TSS	Gastric	stomach

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