Variant report

Variant	rs1999271
Chromosome Location	chr1:94701209-94701210
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:94699487..94702162-chr1:94703136..94705781,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000137962	Chromatin interaction

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs1054626	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11165103	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11165114	0.90[EUR][1000 genomes]
rs12022859	1.00[CEU][hapmap];0.89[CHB][hapmap];0.86[JPT][hapmap];0.91[EUR][1000 genomes]
rs12024941	0.87[EUR][1000 genomes]
rs12027548	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12031606	0.87[EUR][1000 genomes]
rs12036085	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12038745	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12039546	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12042509	1.00[CEU][hapmap];0.80[CHB][hapmap];0.89[JPT][hapmap];0.91[EUR][1000 genomes]
rs12046536	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12093742	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12562103	0.91[EUR][1000 genomes]
rs12563826	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1360365	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1576592	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1611832	0.88[EUR][1000 genomes]
rs1622451	0.91[EUR][1000 genomes]
rs1623248	0.91[EUR][1000 genomes]
rs1623314	1.00[CEU][hapmap];0.80[CHB][hapmap];0.89[JPT][hapmap];0.91[EUR][1000 genomes]
rs1629275	0.81[AFR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1687947	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1687950	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16928	1.00[CEU][hapmap];0.89[CHB][hapmap];0.88[JPT][hapmap];0.90[EUR][1000 genomes]
rs17111408	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17111419	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17111426	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17111436	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1765636	0.91[EUR][1000 genomes]
rs1765640	1.00[CEU][hapmap];0.80[CHB][hapmap];0.89[JPT][hapmap];0.86[EUR][1000 genomes]
rs1929131	0.87[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1999270	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2130899	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2391472	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35275815	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3789690	0.89[EUR][1000 genomes]
rs4543802	0.91[EUR][1000 genomes]
rs4847201	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4847296	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55961421	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56037795	0.87[EUR][1000 genomes]
rs57666908	0.89[EUR][1000 genomes]
rs6541343	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6541345	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6662877	0.90[EUR][1000 genomes]
rs6673491	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6675959	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6681827	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66918029	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66961454	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs67180557	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs67554381	0.88[EUR][1000 genomes]
rs67612304	0.91[EUR][1000 genomes]
rs67681803	0.87[EUR][1000 genomes]
rs67807923	0.90[EUR][1000 genomes]
rs68193246	0.91[EUR][1000 genomes]
rs7413345	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7415246	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7515965	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7520754	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7525320	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7533977	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7554714	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94697000-94701400	Flanking Active TSS	HUVEC	blood vessel
2	chr1:94698200-94702800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr1:94699200-94703600	Active TSS	Breast Myoepithelial Primary Cells	Breast
4	chr1:94699600-94701800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
5	chr1:94699600-94702200	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr1:94699600-94703800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr1:94699800-94702400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr1:94699800-94702600	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr1:94699800-94703200	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr1:94699800-94703400	Active TSS	HMEC	breast
11	chr1:94700200-94701400	Flanking Active TSS	NH-A	brain
12	chr1:94700200-94701600	Flanking Active TSS	Liver	Liver
13	chr1:94700200-94703600	Active TSS	Skeletal Muscle Male	skeletal muscle
14	chr1:94700400-94701400	Weak transcription	Stomach Mucosa	stomach
15	chr1:94700400-94702600	Bivalent/Poised TSS	Fetal Kidney	kidney
16	chr1:94700400-94703200	Active TSS	Skeletal Muscle Female	skeletal muscle
17	chr1:94700600-94701400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr1:94700600-94702800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr1:94700600-94703400	Active TSS	Muscle Satellite Cultured Cells	--
20	chr1:94700600-94703800	Active TSS	Right Atrium	heart
21	chr1:94700800-94701400	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
22	chr1:94700800-94701400	Flanking Active TSS	A549	lung
23	chr1:94700800-94701600	Enhancers	Placenta Amnion	Placenta Amnion
24	chr1:94700800-94701600	Flanking Active TSS	HepG2	liver
25	chr1:94700800-94701600	Flanking Active TSS	Osteobl	bone
26	chr1:94700800-94702000	Active TSS	Fetal Muscle Leg	muscle
27	chr1:94700800-94702200	Bivalent/Poised TSS	Fetal Intestine Large	intestine
28	chr1:94700800-94702400	Bivalent/Poised TSS	Brain Inferior Temporal Lobe	brain
29	chr1:94700800-94702800	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
30	chr1:94700800-94703200	Bivalent/Poised TSS	Brain Anterior Caudate	brain
31	chr1:94700800-94703400	Active TSS	Stomach Smooth Muscle	stomach
32	chr1:94700800-94703600	Active TSS	NHLF	lung
33	chr1:94700800-94703800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr1:94701000-94701800	Bivalent/Poised TSS	Cortex derived primary cultured neurospheres	brain
35	chr1:94701000-94701800	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr1:94701000-94701800	Active TSS	Adipose Nuclei	Adipose
37	chr1:94701000-94701800	Enhancers	Hela-S3	cervix
38	chr1:94701000-94702200	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr1:94701000-94703400	Active TSS	Fetal Muscle Trunk	muscle
40	chr1:94701000-94703400	Active TSS	NHEK	skin
41	chr1:94701000-94703600	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr1:94701000-94703600	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr1:94701000-94703600	Active TSS	NHDF-Ad	bronchial
44	chr1:94701000-94703800	Active TSS	Psoas Muscle	Psoas
45	chr1:94701000-94703800	Active TSS	Right Ventricle	heart
46	chr1:94701000-94704000	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
47	chr1:94701200-94701400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr1:94701200-94701400	Bivalent/Poised TSS	Primary T cells from cord blood	blood
49	chr1:94701200-94701400	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr1:94701200-94701400	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum

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