Variant report

Variant	rs6541345
Chromosome Location	chr1:94708404-94708405
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:94707593..94709245-chr1:94712406..94714415,2	K562	blood:

Variant related genes	Relation type
ENSG00000231363	Chromatin interaction

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs1054626	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11165103	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11165114	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12022859	0.91[EUR][1000 genomes]
rs12024941	0.87[EUR][1000 genomes]
rs12027548	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12031606	0.87[EUR][1000 genomes]
rs12036085	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12038745	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12039546	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12042509	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12046536	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12093742	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12562103	0.91[EUR][1000 genomes]
rs12563826	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1360365	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1576592	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1611832	0.88[EUR][1000 genomes]
rs1622451	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1623248	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1623314	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1629275	0.85[AFR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1687947	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1687950	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16928	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17111408	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17111419	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17111426	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17111436	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1765636	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1765640	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1929131	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1999270	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1999271	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2130899	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2391472	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35275815	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3789690	0.89[EUR][1000 genomes]
rs4543802	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4847201	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4847296	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55961421	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56037795	0.87[EUR][1000 genomes]
rs57666908	0.89[EUR][1000 genomes]
rs6541343	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6662877	0.90[EUR][1000 genomes]
rs6673491	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6675959	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6681827	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs66918029	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs66961454	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs67180557	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs67554381	0.88[EUR][1000 genomes]
rs67612304	0.91[EUR][1000 genomes]
rs67681803	0.87[EUR][1000 genomes]
rs67807923	0.90[EUR][1000 genomes]
rs68193246	0.91[EUR][1000 genomes]
rs7413345	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7415246	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7515965	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7520754	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7525320	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7533977	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7554714	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94703600-94709000	Enhancers	HUVEC	blood vessel
2	chr1:94703600-94712000	Weak transcription	HSMM	muscle
3	chr1:94704000-94709000	Weak transcription	Liver	Liver
4	chr1:94704800-94711400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr1:94705400-94709800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr1:94705800-94709800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr1:94705800-94709800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr1:94706000-94709800	Weak transcription	Osteobl	bone
9	chr1:94706400-94710000	Weak transcription	A549	lung
10	chr1:94706600-94710400	Weak transcription	NH-A	brain
11	chr1:94706800-94709200	Weak transcription	HepG2	liver
12	chr1:94707600-94708800	Enhancers	NHEK	skin
13	chr1:94708400-94710000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links