Variant report

Variant	rs1576592
Chromosome Location	chr1:94710142-94710143
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs1054626	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11165103	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11165114	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12022859	0.91[EUR][1000 genomes]
rs12024941	0.87[EUR][1000 genomes]
rs12027548	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12031606	0.87[EUR][1000 genomes]
rs12036085	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12038745	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12039546	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12042509	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12046536	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12093742	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12562103	0.91[EUR][1000 genomes]
rs12563826	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1360365	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1611832	0.88[EUR][1000 genomes]
rs1622451	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1623248	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1623314	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1629275	0.85[AFR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1687947	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1687950	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16928	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17111408	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17111419	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17111426	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17111436	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1765636	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1765640	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1929131	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1999270	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1999271	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2130899	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2391472	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35275815	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3789690	0.89[EUR][1000 genomes]
rs4543802	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4847201	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4847296	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55961421	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56037795	0.87[EUR][1000 genomes]
rs57666908	0.89[EUR][1000 genomes]
rs6541343	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6541345	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6662877	0.90[EUR][1000 genomes]
rs6673491	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6675959	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6681827	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs66918029	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs66961454	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs67180557	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs67554381	0.88[EUR][1000 genomes]
rs67612304	0.91[EUR][1000 genomes]
rs67681803	0.87[EUR][1000 genomes]
rs67807923	0.90[EUR][1000 genomes]
rs68193246	0.91[EUR][1000 genomes]
rs7413345	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7415246	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7515965	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7520754	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7525320	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7533977	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7554714	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428510	chr1:94709575-94866655	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94703600-94712000	Weak transcription	HSMM	muscle
2	chr1:94704800-94711400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr1:94706600-94710400	Weak transcription	NH-A	brain
4	chr1:94709000-94710200	Flanking Active TSS	HUVEC	blood vessel
5	chr1:94709000-94712200	Enhancers	Liver	Liver
6	chr1:94709400-94710600	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr1:94709600-94710600	Active TSS	Muscle Satellite Cultured Cells	--
8	chr1:94709800-94710600	Weak transcription	HepG2	liver
9	chr1:94709800-94710800	Active TSS	Osteobl	bone
10	chr1:94709800-94711400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr1:94709800-94711600	Flanking Active TSS	NHEK	skin
12	chr1:94709800-94712400	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr1:94709800-94712800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr1:94709800-94713600	Active TSS	Right Atrium	heart
15	chr1:94710000-94710600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr1:94710000-94710600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr1:94710000-94710600	Bivalent/Poised TSS	Primary T cells from cord blood	blood
18	chr1:94710000-94711200	Active TSS	HMEC	breast
19	chr1:94710000-94711600	Enhancers	A549	lung
20	chr1:94710000-94713600	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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