Variant report

Variant	rs67180557
Chromosome Location	chr1:94775833-94775834
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:94764343..94765905-chr1:94774402..94776813,2	K562	blood:

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs1054626	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11165103	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11165114	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12022859	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12024941	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12027548	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12031606	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12036085	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12038745	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12039546	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12042509	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12046536	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12093742	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12562103	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12563826	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1360365	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1576592	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1611832	0.94[EUR][1000 genomes]
rs1622451	0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1623248	0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1623314	0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1629275	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1687947	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1687950	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16928	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17111408	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17111419	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17111426	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17111436	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1765636	0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1765640	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1929131	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1999270	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1999271	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2130899	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2391472	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35275815	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3789690	0.83[EUR][1000 genomes]
rs4543802	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4847201	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4847296	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55961421	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56037795	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs57666908	0.83[EUR][1000 genomes]
rs6541343	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6541345	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6662877	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6673491	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6675959	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6681827	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs66918029	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs66961454	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs67554381	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs67612304	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67681803	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs67807923	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs68193246	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7413345	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7415246	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7515965	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7520754	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7525320	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7533977	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7554714	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428510	chr1:94709575-94866655	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94772000-94776800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr1:94772000-94780600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr1:94772000-94781400	Weak transcription	Osteobl	bone
4	chr1:94772800-94776800	Weak transcription	Fetal Muscle Leg	muscle
5	chr1:94774600-94787800	Weak transcription	Aorta	Aorta
6	chr1:94774800-94776400	Flanking Active TSS	HepG2	liver
7	chr1:94774800-94777000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr1:94775000-94776400	Enhancers	A549	lung
9	chr1:94775000-94783000	Weak transcription	Right Ventricle	heart
10	chr1:94775600-94776000	Flanking Active TSS	Liver	Liver
11	chr1:94775600-94776400	Enhancers	Primary neutrophils fromperipheralblood	blood
12	chr1:94775600-94776800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr1:94775600-94776800	Enhancers	Duodenum Mucosa	Duodenum
14	chr1:94775600-94776800	Enhancers	Fetal Intestine Large	intestine
15	chr1:94775600-94776800	Enhancers	Small Intestine	intestine
16	chr1:94775600-94776800	Enhancers	NHDF-Ad	bronchial
17	chr1:94775600-94777000	Enhancers	Fetal Intestine Small	intestine
18	chr1:94775600-94777000	Enhancers	Gastric	stomach
19	chr1:94775600-94777000	Enhancers	NHLF	lung
20	chr1:94775600-94777600	Enhancers	HUVEC	blood vessel
21	chr1:94775800-94776000	Enhancers	Lung	lung
22	chr1:94775800-94776000	Enhancers	Ovary	ovary
23	chr1:94775800-94776000	Enhancers	Psoas Muscle	Psoas
24	chr1:94775800-94776000	Enhancers	Sigmoid Colon	Sigmoid Colon
25	chr1:94775800-94776400	Enhancers	Primary monocytes fromperipheralblood	blood
26	chr1:94775800-94776400	Enhancers	Monocytes-CD14+_RO01746	blood
27	chr1:94775800-94776600	Enhancers	Muscle Satellite Cultured Cells	--
28	chr1:94775800-94776600	Enhancers	Left Ventricle	heart
29	chr1:94775800-94776600	Enhancers	Spleen	Spleen
30	chr1:94775800-94776800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr1:94775800-94776800	Enhancers	Pancreas	Pancrea
32	chr1:94775800-94776800	Enhancers	Hela-S3	cervix
33	chr1:94775800-94777000	Enhancers	Right Atrium	heart
34	chr1:94775800-94777600	Enhancers	Stomach Mucosa	stomach

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