Variant report

Variant	rs12046536
Chromosome Location	chr1:94698650-94698651
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:94692312..94694422-chr1:94696835..94699203,2	MCF-7	breast:

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs1054626	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11165103	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11165114	0.88[EUR][1000 genomes]
rs12022859	1.00[CEU][hapmap];0.89[CHB][hapmap];0.86[JPT][hapmap];0.92[EUR][1000 genomes]
rs12024941	0.88[EUR][1000 genomes]
rs12027548	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12031606	0.88[EUR][1000 genomes]
rs12036085	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12038745	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12039546	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12042509	1.00[CEU][hapmap];0.90[CHB][hapmap];0.89[JPT][hapmap];0.92[EUR][1000 genomes]
rs12093742	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12562103	0.92[EUR][1000 genomes]
rs12563826	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1360365	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1576592	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1611832	0.87[EUR][1000 genomes]
rs1622451	0.89[EUR][1000 genomes]
rs1623248	0.89[EUR][1000 genomes]
rs1623314	1.00[CEU][hapmap];0.90[CHB][hapmap];0.89[JPT][hapmap];0.89[EUR][1000 genomes]
rs1629275	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1687947	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1687950	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16928	1.00[CEU][hapmap];0.89[CHB][hapmap];0.88[JPT][hapmap];0.88[EUR][1000 genomes]
rs17111408	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17111419	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17111426	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17111436	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1765636	0.89[EUR][1000 genomes]
rs1765640	1.00[CEU][hapmap];0.90[CHB][hapmap];0.89[JPT][hapmap];0.84[EUR][1000 genomes]
rs1929131	0.87[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1999270	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1999271	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2130899	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2391472	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35275815	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3789690	0.91[EUR][1000 genomes]
rs4543802	0.92[EUR][1000 genomes]
rs4847201	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4847296	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55961421	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56037795	0.88[EUR][1000 genomes]
rs57666908	0.91[EUR][1000 genomes]
rs6541343	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6541345	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6662877	0.91[EUR][1000 genomes]
rs6673491	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6675959	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6681827	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66918029	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66961454	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs67180557	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs67554381	0.89[EUR][1000 genomes]
rs67612304	0.92[EUR][1000 genomes]
rs67681803	0.88[EUR][1000 genomes]
rs67807923	0.91[EUR][1000 genomes]
rs68193246	0.92[EUR][1000 genomes]
rs7413345	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7415246	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7515965	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7520754	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7525320	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7533977	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7554714	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94668800-94699000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr1:94673800-94701000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr1:94685000-94701000	Weak transcription	Right Ventricle	heart
4	chr1:94685200-94700600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr1:94685200-94700800	Weak transcription	NHLF	lung
6	chr1:94685200-94701000	Weak transcription	Psoas Muscle	Psoas
7	chr1:94685800-94699400	Weak transcription	Fetal Muscle Leg	muscle
8	chr1:94692600-94700200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr1:94694800-94699400	Weak transcription	Stomach Mucosa	stomach
10	chr1:94696200-94701200	Enhancers	Fetal Heart	heart
11	chr1:94696400-94699400	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr1:94696400-94700400	Enhancers	A549	lung
13	chr1:94696600-94698800	Enhancers	NH-A	brain
14	chr1:94696800-94699600	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr1:94697000-94698800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr1:94697000-94701400	Flanking Active TSS	HUVEC	blood vessel
17	chr1:94697200-94698800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr1:94697200-94699200	Enhancers	NHEK	skin
19	chr1:94697200-94699600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr1:94697200-94700200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr1:94697200-94700200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr1:94697400-94700800	Weak transcription	HSMMtube	muscle
23	chr1:94697600-94698800	Weak transcription	Liver	Liver
24	chr1:94697600-94699200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr1:94697800-94699400	Weak transcription	Adipose Nuclei	Adipose
26	chr1:94698000-94698800	Weak transcription	HepG2	liver
27	chr1:94698000-94698800	Weak transcription	Osteobl	bone
28	chr1:94698000-94699000	Weak transcription	Skeletal Muscle Male	skeletal muscle
29	chr1:94698000-94699200	Enhancers	Muscle Satellite Cultured Cells	--
30	chr1:94698000-94699200	Weak transcription	HMEC	breast
31	chr1:94698000-94699400	Weak transcription	Skeletal Muscle Female	skeletal muscle
32	chr1:94698200-94699200	Weak transcription	HSMM	muscle
33	chr1:94698200-94699400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
34	chr1:94698200-94702800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr1:94698400-94698800	Weak transcription	NHDF-Ad	bronchial
36	chr1:94698400-94699200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr1:94698400-94699400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr1:94698600-94698800	Enhancers	Fetal Muscle Trunk	muscle
39	chr1:94698600-94699000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr1:94698600-94699000	Enhancers	Left Ventricle	heart
41	chr1:94698600-94699400	Enhancers	HUES48 Cell Line	embryonic stem cell

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