Variant report

Variant	rs6541343
Chromosome Location	chr1:94689027-94689028
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs1054626	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10782981	0.87[YRI][hapmap]
rs11165103	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11165114	0.90[EUR][1000 genomes]
rs12022859	1.00[CEU][hapmap];0.89[CHB][hapmap];0.85[CHD][hapmap];0.93[GIH][hapmap];0.86[JPT][hapmap];0.83[TSI][hapmap];0.91[EUR][1000 genomes]
rs12024941	0.87[EUR][1000 genomes]
rs12027548	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12031606	0.87[EUR][1000 genomes]
rs12036085	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12038745	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12039546	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12042509	1.00[CEU][hapmap];0.89[CHB][hapmap];0.88[JPT][hapmap];0.91[EUR][1000 genomes]
rs12046536	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12093742	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12562103	0.91[EUR][1000 genomes]
rs12563826	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1360365	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1576592	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1611832	0.88[EUR][1000 genomes]
rs1622451	0.91[EUR][1000 genomes]
rs1623248	0.91[EUR][1000 genomes]
rs1623314	1.00[CEU][hapmap];0.89[CHB][hapmap];0.88[JPT][hapmap];0.91[EUR][1000 genomes]
rs1629275	0.81[AFR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1687947	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1687950	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16928	1.00[CEU][hapmap];0.89[CHB][hapmap];0.91[CHD][hapmap];0.88[JPT][hapmap];0.90[EUR][1000 genomes]
rs17111408	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17111419	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.83[TSI][hapmap];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17111426	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.89[TSI][hapmap];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17111436	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.83[TSI][hapmap];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1765636	0.91[EUR][1000 genomes]
rs1765640	1.00[CEU][hapmap];0.89[CHB][hapmap];0.88[JPT][hapmap];0.86[EUR][1000 genomes]
rs1929131	0.86[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1999270	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1999271	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2130899	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2391472	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35275815	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3789690	0.89[EUR][1000 genomes]
rs4543802	0.91[EUR][1000 genomes]
rs4847201	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4847296	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55961421	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56037795	0.87[EUR][1000 genomes]
rs57666908	0.89[EUR][1000 genomes]
rs6541345	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6662877	0.90[EUR][1000 genomes]
rs6673491	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6675959	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6681827	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66918029	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66961454	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs67180557	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs67554381	0.88[EUR][1000 genomes]
rs67612304	0.91[EUR][1000 genomes]
rs67681803	0.87[EUR][1000 genomes]
rs67807923	0.90[EUR][1000 genomes]
rs68193246	0.91[EUR][1000 genomes]
rs7413345	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7415246	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7515965	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7520754	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7525320	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7533977	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7554714	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.99[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94668800-94699000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr1:94673800-94698600	Weak transcription	Fetal Muscle Trunk	muscle
3	chr1:94673800-94701000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr1:94674000-94697000	Weak transcription	HSMMtube	muscle
5	chr1:94676400-94691600	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr1:94683000-94690000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr1:94684200-94690000	Strong transcription	NHEK	skin
8	chr1:94684800-94692800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr1:94684800-94698600	Weak transcription	Left Ventricle	heart
10	chr1:94685000-94691400	Weak transcription	Fetal Heart	heart
11	chr1:94685000-94691800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr1:94685000-94692000	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr1:94685000-94701000	Weak transcription	Right Ventricle	heart
14	chr1:94685200-94690400	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr1:94685200-94691800	Weak transcription	Adipose Nuclei	Adipose
16	chr1:94685200-94696800	Weak transcription	HepG2	liver
17	chr1:94685200-94700600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr1:94685200-94700800	Weak transcription	NHLF	lung
19	chr1:94685200-94701000	Weak transcription	Psoas Muscle	Psoas
20	chr1:94685400-94689200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr1:94685400-94690800	Weak transcription	HSMM	muscle
22	chr1:94685400-94697400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr1:94685600-94696000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr1:94685800-94693800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr1:94685800-94699400	Weak transcription	Fetal Muscle Leg	muscle
26	chr1:94686000-94691600	Weak transcription	NH-A	brain
27	chr1:94687000-94690400	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr1:94687800-94689800	Strong transcription	Osteobl	bone
29	chr1:94688000-94690200	Weak transcription	NHDF-Ad	bronchial
30	chr1:94688000-94691600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr1:94688000-94693200	Weak transcription	A549	lung
32	chr1:94688000-94694600	Weak transcription	HMEC	breast
33	chr1:94688200-94691400	Weak transcription	Liver	Liver
34	chr1:94688200-94694200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr1:94688400-94694400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr1:94688600-94694600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr1:94688800-94690400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr1:94689000-94690400	Strong transcription	HUVEC	blood vessel

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links