Variant report

Variant	rs1687950
Chromosome Location	chr1:94716440-94716441
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs1054626	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11165103	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11165114	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12022859	1.00[CEU][hapmap];0.89[CHB][hapmap];0.85[CHD][hapmap];0.93[GIH][hapmap];0.86[JPT][hapmap];0.89[TSI][hapmap];0.93[EUR][1000 genomes]
rs12024941	0.88[EUR][1000 genomes]
rs12027548	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12031606	0.88[EUR][1000 genomes]
rs12036085	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12038745	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12039546	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12042509	1.00[CEU][hapmap];0.89[CHB][hapmap];0.88[JPT][hapmap];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12046536	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12093742	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12562103	0.93[EUR][1000 genomes]
rs12563826	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1360365	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1576592	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1611832	0.90[EUR][1000 genomes]
rs1622451	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1623248	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1623314	1.00[CEU][hapmap];0.89[CHB][hapmap];0.88[JPT][hapmap];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1629275	0.85[AFR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1687947	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16928	1.00[CEU][hapmap];0.89[CHB][hapmap];0.91[CHD][hapmap];0.88[JPT][hapmap];0.83[TSI][hapmap];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17111408	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17111419	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.89[TSI][hapmap];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17111426	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.94[TSI][hapmap];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17111436	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.89[TSI][hapmap];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1765636	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1765640	1.00[CEU][hapmap];0.89[CHB][hapmap];0.88[JPT][hapmap];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1929131	0.86[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1999270	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1999271	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2130899	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2391472	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35275815	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3789690	0.88[EUR][1000 genomes]
rs4543802	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4847201	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4847296	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55961421	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56037795	0.88[EUR][1000 genomes]
rs57666908	0.88[EUR][1000 genomes]
rs6541343	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.94[TSI][hapmap];0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6541345	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6662877	0.91[EUR][1000 genomes]
rs6673491	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[TSI][hapmap];0.85[YRI][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6675959	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6681827	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs66918029	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs66961454	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs67180557	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs67554381	0.87[EUR][1000 genomes]
rs67612304	0.93[EUR][1000 genomes]
rs67681803	0.88[EUR][1000 genomes]
rs67807923	0.91[EUR][1000 genomes]
rs68193246	0.93[EUR][1000 genomes]
rs7413345	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7415246	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7515965	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7520754	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7525320	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7533977	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7554714	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428510	chr1:94709575-94866655	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94713600-94722800	Weak transcription	Gastric	stomach
2	chr1:94714000-94716800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr1:94714000-94719200	Weak transcription	HUVEC	blood vessel
4	chr1:94714000-94719800	Weak transcription	Adipose Nuclei	Adipose
5	chr1:94714000-94719800	Weak transcription	NHDF-Ad	bronchial
6	chr1:94714600-94724000	Weak transcription	A549	lung
7	chr1:94714800-94719000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr1:94714800-94719600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr1:94714800-94719800	Weak transcription	NH-A	brain
10	chr1:94714800-94721200	Weak transcription	HSMM	muscle
11	chr1:94715000-94719800	Weak transcription	Osteobl	bone
12	chr1:94715600-94716600	Enhancers	Placenta Amnion	Placenta Amnion
13	chr1:94716000-94719600	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr1:94716200-94719200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr1:94716200-94719200	Weak transcription	Pancreas	Pancrea
16	chr1:94716200-94719800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr1:94716200-94719800	Weak transcription	NHEK	skin
18	chr1:94716200-94720000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr1:94716200-94720000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr1:94716400-94717200	Weak transcription	Stomach Mucosa	stomach
21	chr1:94716400-94719200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr1:94716400-94720000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr1:94716400-94720000	Weak transcription	HMEC	breast

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