Variant report

Variant	rs12053240
Chromosome Location	chr2:180297379-180297380
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12986852	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12988031	0.89[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs13027378	0.90[ASN][1000 genomes]
rs1517710	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs2367796	0.80[YRI][hapmap];0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs34388246	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35057482	0.83[ASN][1000 genomes]
rs35089462	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs36011362	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs67318280	0.86[ASN][1000 genomes]
rs71425627	0.85[ASN][1000 genomes]
rs71425629	0.80[ASN][1000 genomes]
rs995011	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180293800-180299400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr2:180293800-180307800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr2:180294000-180299200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr2:180294200-180306600	Weak transcription	Liver	Liver
5	chr2:180294200-180307400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr2:180294600-180299000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr2:180294600-180299400	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr2:180294600-180305600	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr2:180295800-180299200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr2:180295800-180299400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr2:180295800-180299600	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr2:180296000-180299400	Weak transcription	HUES48 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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