Variant report

Variant	rs13027378
Chromosome Location	chr2:180308574-180308575
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12053240	0.90[ASN][1000 genomes]
rs12986852	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12988031	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2367796	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34388246	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs35057482	0.91[ASN][1000 genomes]
rs35089462	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs36011362	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs67318280	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs71425627	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs71425629	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs995011	0.87[ASN][1000 genomes]

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180306400-180308800	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr2:180306600-180308600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr2:180306600-180311400	Strong transcription	Liver	Liver
4	chr2:180306800-180309000	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr2:180307000-180309800	Enhancers	Placenta Amnion	Placenta Amnion
6	chr2:180307000-180310200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr2:180307200-180310400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
8	chr2:180307400-180308600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr2:180307400-180309800	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr2:180307400-180310200	Enhancers	H1 Cell Line	embryonic stem cell
11	chr2:180307400-180310200	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr2:180307400-180310600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr2:180307400-180312800	Enhancers	NHEK	skin
14	chr2:180307600-180308600	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
15	chr2:180307600-180309800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr2:180307800-180308600	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
17	chr2:180307800-180309200	Genic enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr2:180307800-180310200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr2:180307800-180310600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr2:180307800-180320800	Weak transcription	HepG2	liver
21	chr2:180308000-180308600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr2:180308000-180308600	Enhancers	HMEC	breast
23	chr2:180308000-180309200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr2:180308000-180309800	Enhancers	Fetal Intestine Large	intestine
25	chr2:180308000-180310400	Enhancers	iPS-20b Cell Line	embryonic stem cell
26	chr2:180308200-180308600	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
27	chr2:180308200-180308800	Bivalent Enhancer	Fetal Heart	heart
28	chr2:180308200-180309200	Enhancers	Primary neutrophils fromperipheralblood	blood
29	chr2:180308200-180310200	Enhancers	HUES48 Cell Line	embryonic stem cell
30	chr2:180308200-180332600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr2:180308400-180309000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr2:180308400-180310400	Enhancers	H9 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links