Variant report

Variant	rs995011
Chromosome Location	chr2:180292467-180292468
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12053240	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12986852	0.87[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12988031	0.89[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs13027378	0.87[ASN][1000 genomes]
rs1517710	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs2367796	0.92[CHD][hapmap];0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs34388246	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35057482	0.80[ASN][1000 genomes]
rs35089462	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs36011362	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs67318280	0.83[ASN][1000 genomes]
rs71425627	0.82[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs995011	AGPS	cis	parietal	SCAN
rs995011	MTX2	cis	parietal	SCAN

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180284000-180292600	Weak transcription	HepG2	liver
2	chr2:180288400-180293600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr2:180291600-180293600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr2:180292200-180293200	Enhancers	Fetal Brain Female	brain
5	chr2:180292400-180293200	Enhancers	HUES48 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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