Variant report

Variant	rs12986852
Chromosome Location	chr2:180306476-180306477
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12053240	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12988031	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13027378	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1517710	0.83[ASN][1000 genomes]
rs2367796	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34388246	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs35057482	0.95[ASN][1000 genomes]
rs35089462	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs36011362	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs67318280	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs71425627	0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs71425629	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs995011	0.87[AMR][1000 genomes];0.85[ASN][1000 genomes]

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180293800-180307800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr2:180294200-180306600	Weak transcription	Liver	Liver
3	chr2:180294200-180307400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr2:180299800-180308400	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr2:180303800-180307800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr2:180305800-180306600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr2:180305800-180307800	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr2:180306000-180307200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr2:180306000-180307400	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr2:180306200-180307000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr2:180306200-180307200	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr2:180306200-180307600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr2:180306200-180308000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr2:180306400-180306800	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr2:180306400-180306800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr2:180306400-180307400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr2:180306400-180307400	Weak transcription	HUES64 Cell Line	embryonic stem cell
18	chr2:180306400-180307400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr2:180306400-180308800	Weak transcription	Skeletal Muscle Male	skeletal muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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