Variant report

Variant	rs34388246
Chromosome Location	chr2:180299304-180299305
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12053240	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12986852	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12988031	0.88[ASN][1000 genomes]
rs13027378	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2367796	0.87[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs35057482	0.87[ASN][1000 genomes]
rs35089462	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs36011362	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67318280	0.91[ASN][1000 genomes]
rs71425627	0.89[ASN][1000 genomes]
rs71425629	0.84[ASN][1000 genomes]
rs995011	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180293800-180299400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr2:180293800-180307800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr2:180294200-180306600	Weak transcription	Liver	Liver
4	chr2:180294200-180307400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr2:180294600-180299400	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr2:180294600-180305600	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr2:180295800-180299400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr2:180295800-180299600	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr2:180296000-180299400	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr2:180299000-180300000	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr2:180299200-180300200	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr2:180299200-180300400	Enhancers	ES-I3 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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