Variant report
| Variant | rs12058640 |
|---|---|
| Chromosome Location | chr1:168419130-168419131 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:64)
| rs_ID | r2[population] |
|---|---|
| rs10918889 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs10918890 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs10918891 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs10918892 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs10918893 | 1.00[EUR][1000 genomes] |
| rs10918895 | 1.00[EUR][1000 genomes] |
| rs10918896 | 1.00[EUR][1000 genomes] |
| rs10918913 | 1.00[EUR][1000 genomes] |
| rs10918914 | 1.00[EUR][1000 genomes] |
| rs10918915 | 1.00[EUR][1000 genomes] |
| rs10918916 | 1.00[EUR][1000 genomes] |
| rs10918918 | 1.00[EUR][1000 genomes] |
| rs10918929 | 1.00[EUR][1000 genomes] |
| rs12059095 | 1.00[EUR][1000 genomes] |
| rs12059526 | 1.00[EUR][1000 genomes] |
| rs12059722 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12060094 | 1.00[EUR][1000 genomes] |
| rs12060180 | 1.00[EUR][1000 genomes] |
| rs12061311 | 1.00[EUR][1000 genomes] |
| rs12061688 | 1.00[EUR][1000 genomes] |
| rs12062599 | 1.00[EUR][1000 genomes] |
| rs12064517 | 1.00[EUR][1000 genomes] |
| rs12064716 | 1.00[EUR][1000 genomes] |
| rs12065600 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12069600 | 1.00[EUR][1000 genomes] |
| rs12071398 | 1.00[EUR][1000 genomes] |
| rs12071533 | 1.00[EUR][1000 genomes] |
| rs12071580 | 1.00[EUR][1000 genomes] |
| rs12071946 | 1.00[EUR][1000 genomes] |
| rs12072708 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12072756 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12073928 | 1.00[EUR][1000 genomes] |
| rs12075383 | 1.00[EUR][1000 genomes] |
| rs12076618 | 1.00[EUR][1000 genomes] |
| rs12080560 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12086182 | 1.00[EUR][1000 genomes] |
| rs12087491 | 1.00[EUR][1000 genomes] |
| rs12088031 | 1.00[EUR][1000 genomes] |
| rs12088109 | 1.00[EUR][1000 genomes] |
| rs12093369 | 1.00[EUR][1000 genomes] |
| rs12093899 | 1.00[EUR][1000 genomes] |
| rs12095242 | 1.00[EUR][1000 genomes] |
| rs12095394 | 1.00[EUR][1000 genomes] |
| rs12096533 | 1.00[EUR][1000 genomes] |
| rs12563551 | 1.00[EUR][1000 genomes] |
| rs1323524 | 1.00[EUR][1000 genomes] |
| rs16860744 | 1.00[EUR][1000 genomes] |
| rs16860745 | 1.00[EUR][1000 genomes] |
| rs16860750 | 1.00[EUR][1000 genomes] |
| rs16860759 | 1.00[EUR][1000 genomes] |
| rs2092400 | 1.00[EUR][1000 genomes] |
| rs58887669 | 1.00[EUR][1000 genomes] |
| rs60094342 | 1.00[EUR][1000 genomes] |
| rs6674956 | 1.00[EUR][1000 genomes] |
| rs73027529 | 1.00[EUR][1000 genomes] |
| rs73031504 | 1.00[EUR][1000 genomes] |
| rs73031508 | 1.00[EUR][1000 genomes] |
| rs74120912 | 1.00[EUR][1000 genomes] |
| rs74120961 | 1.00[EUR][1000 genomes] |
| rs74120963 | 1.00[EUR][1000 genomes] |
| rs74120965 | 1.00[EUR][1000 genomes] |
| rs74123943 | 1.00[EUR][1000 genomes] |
| rs74123944 | 1.00[EUR][1000 genomes] |
| rs7526174 | 1.00[EUR][1000 genomes] |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:168409200-168421400 | Weak transcription | HepG2 | liver |
| 2 | chr1:168409200-168421800 | Weak transcription | ES-I3 Cell Line | embryonic stem cell |
| 3 | chr1:168416400-168419800 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
| 4 | chr1:168416400-168421400 | Weak transcription | Primary Natural Killer cells fromperipheralblood | blood |
