The 2.0 version of rSNPBase

Variant report

Variant rs12060094
Chromosome Location chr1:168476583-168476584
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:47 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:168468800-168478600 Weak transcription HepG2 liver
2 chr1:168469200-168476800 Weak transcription Placenta Amnion Placenta Amnion
3 chr1:168472000-168483000 Weak transcription Aorta Aorta
4 chr1:168472600-168483200 Weak transcription Spleen Spleen
5 chr1:168472800-168477200 Enhancers Foreskin Fibroblast Primary Cells skin02 Skin
6 chr1:168473000-168477600 Enhancers HMEC breast
7 chr1:168473200-168477400 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
8 chr1:168474000-168476600 Weak transcription Skeletal Muscle Female skeletal muscle
9 chr1:168474000-168478600 Weak transcription Primary T cells fromperipheralblood blood
10 chr1:168474200-168479800 Weak transcription Primary T cells from cord blood blood
11 chr1:168474200-168481000 Weak transcription Primary T helper cells fromperipheralblood blood
12 chr1:168474400-168477200 Weak transcription GM12878-XiMat blood
13 chr1:168474400-168479000 Weak transcription Primary T helper naive cells from peripheral blood blood
14 chr1:168474400-168479000 Weak transcription Primary T killer memory cells from peripheral blood blood
15 chr1:168474600-168476800 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
16 chr1:168474600-168477200 Enhancers NHLF lung
17 chr1:168474600-168479000 Weak transcription Primary T killer naive cells fromperipheralblood blood
18 chr1:168474600-168481600 Weak transcription Primary T helper cells PMA-I stimulated --
19 chr1:168474800-168477200 Enhancers NHEK skin
20 chr1:168474800-168478600 Weak transcription Primary hematopoietic stem cells short term culture blood
21 chr1:168475200-168476600 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
22 chr1:168475200-168476600 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
23 chr1:168475200-168477000 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
24 chr1:168475200-168478600 Weak transcription Primary Natural Killer cells fromperipheralblood blood
25 chr1:168475400-168476800 Enhancers HSMM muscle
26 chr1:168475400-168477000 Weak transcription Small Intestine intestine
27 chr1:168475400-168479800 Enhancers Fetal Muscle Leg muscle
28 chr1:168475600-168476800 Enhancers HSMMtube muscle
29 chr1:168475600-168478200 Weak transcription Primary monocytes fromperipheralblood blood
30 chr1:168475800-168476800 Enhancers Muscle Satellite Cultured Cells --
31 chr1:168475800-168477800 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
32 chr1:168475800-168478200 Weak transcription Monocytes-CD14+_RO01746 blood
33 chr1:168475800-168478800 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
34 chr1:168475800-168480400 Enhancers NHDF-Ad bronchial
35 chr1:168475800-168482600 Weak transcription Fetal Adrenal Gland Adrenal Gland
36 chr1:168476000-168476600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
37 chr1:168476000-168476600 Enhancers Osteobl bone
38 chr1:168476000-168477600 Enhancers Rectal Smooth Muscle rectum
39 chr1:168476000-168479600 Enhancers Duodenum Smooth Muscle Duodenum
40 chr1:168476200-168477800 Enhancers Colon Smooth Muscle Colon
41 chr1:168476400-168476800 Enhancers Breast Myoepithelial Primary Cells Breast
42 chr1:168476400-168476800 Enhancers Ovary ovary
43 chr1:168476400-168477000 Enhancers Fetal Stomach stomach
44 chr1:168476400-168477200 Enhancers Pancreas Pancrea
45 chr1:168476400-168477200 Enhancers Skeletal Muscle Male skeletal muscle
46 chr1:168476400-168477600 Enhancers Stomach Smooth Muscle stomach
47 chr1:168476400-168478000 Enhancers Psoas Muscle Psoas

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Last update: Aug 31, 2015