Variant report

Variant	rs12080560
Chromosome Location	chr1:168428707-168428708
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10918889	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10918890	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10918891	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10918892	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10918893	1.00[EUR][1000 genomes]
rs10918895	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10918896	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10918913	1.00[EUR][1000 genomes]
rs10918914	1.00[EUR][1000 genomes]
rs10918915	1.00[EUR][1000 genomes]
rs10918916	1.00[EUR][1000 genomes]
rs10918918	1.00[EUR][1000 genomes]
rs10918929	1.00[EUR][1000 genomes]
rs12058640	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12059095	1.00[EUR][1000 genomes]
rs12059526	1.00[EUR][1000 genomes]
rs12059722	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12060094	1.00[EUR][1000 genomes]
rs12060180	1.00[EUR][1000 genomes]
rs12061311	1.00[EUR][1000 genomes]
rs12061688	1.00[EUR][1000 genomes]
rs12062599	1.00[EUR][1000 genomes]
rs12064517	1.00[EUR][1000 genomes]
rs12064716	1.00[EUR][1000 genomes]
rs12065600	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12069600	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12071398	1.00[EUR][1000 genomes]
rs12071533	1.00[EUR][1000 genomes]
rs12071580	1.00[EUR][1000 genomes]
rs12071946	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12072708	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12072756	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12073928	1.00[EUR][1000 genomes]
rs12075383	1.00[EUR][1000 genomes]
rs12076618	1.00[EUR][1000 genomes]
rs12086182	1.00[EUR][1000 genomes]
rs12087491	1.00[EUR][1000 genomes]
rs12088031	1.00[EUR][1000 genomes]
rs12088109	1.00[EUR][1000 genomes]
rs12093369	1.00[EUR][1000 genomes]
rs12093899	1.00[EUR][1000 genomes]
rs12095242	1.00[EUR][1000 genomes]
rs12095394	1.00[EUR][1000 genomes]
rs12096533	1.00[EUR][1000 genomes]
rs12563551	0.85[CHB][hapmap];0.86[JPT][hapmap];1.00[EUR][1000 genomes]
rs1323524	1.00[EUR][1000 genomes]
rs16860744	1.00[EUR][1000 genomes]
rs16860745	1.00[EUR][1000 genomes]
rs16860750	1.00[EUR][1000 genomes]
rs16860759	1.00[EUR][1000 genomes]
rs2092400	1.00[EUR][1000 genomes]
rs58887669	1.00[EUR][1000 genomes]
rs60094342	1.00[EUR][1000 genomes]
rs6674956	1.00[EUR][1000 genomes]
rs73027529	1.00[EUR][1000 genomes]
rs73031504	1.00[EUR][1000 genomes]
rs73031508	1.00[EUR][1000 genomes]
rs74120912	1.00[EUR][1000 genomes]
rs74120961	1.00[EUR][1000 genomes]
rs74120963	1.00[EUR][1000 genomes]
rs74120965	1.00[EUR][1000 genomes]
rs74123943	1.00[EUR][1000 genomes]
rs74123944	1.00[EUR][1000 genomes]
rs7526174	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2500882	chr1:168426298-168429687	Enhancers Active TSS Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
2	esv2188881	chr1:168426881-168429003	Weak transcription Flanking Active TSS Enhancers	n/a	n/a	inside rSNPs	diseases
3	esv3452563	chr1:168426919-168428923	Weak transcription Flanking Active TSS Enhancers	n/a	n/a	inside rSNPs	diseases
4	esv3452565	chr1:168426919-168428923	Weak transcription Flanking Active TSS Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:168423000-168430600	Weak transcription	Liver	Liver
2	chr1:168426000-168435200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr1:168426600-168435000	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr1:168426600-168435200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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