Variant report

Variant	rs12076890
Chromosome Location	chr1:213258438-213258439
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:213256791..213258933-chr1:213271084..213273108,2	K562	blood:
2	chr1:213257126..213258627-chr1:213261008..213263824,2	K562	blood:
3	chr1:213250657..213253680-chr1:213255277..213258853,3	K562	blood:
4	chr1:213255405..213259890-chr1:213260216..213264624,5	K562	blood:
5	chr1:213254826..213256473-chr1:213258082..213260548,2	K562	blood:

rs_ID	r²[population]
rs11120087	0.83[AFR][1000 genomes]
rs12064585	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs12079331	0.83[AFR][1000 genomes]
rs12087445	0.83[AFR][1000 genomes]
rs12091457	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs17020062	1.00[YRI][hapmap]
rs17020314	1.00[YRI][hapmap]

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:213228800-213263200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr1:213229400-213283400	Weak transcription	Hela-S3	cervix
3	chr1:213233000-213262600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr1:213234800-213261000	Weak transcription	Stomach Mucosa	stomach
5	chr1:213240200-213272600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr1:213240400-213261600	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr1:213240400-213274600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr1:213240600-213261200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr1:213241000-213259400	Weak transcription	Brain Anterior Caudate	brain
10	chr1:213241200-213261000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr1:213243000-213259800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr1:213243800-213262600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr1:213244200-213268000	Weak transcription	Brain Substantia Nigra	brain
14	chr1:213244200-213271000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr1:213244200-213273200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr1:213244200-213273200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
17	chr1:213244200-213296200	Weak transcription	NHDF-Ad	bronchial
18	chr1:213246600-213259400	Weak transcription	Pancreas	Pancrea
19	chr1:213246800-213283800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr1:213251200-213259400	Weak transcription	NHLF	lung
21	chr1:213251200-213293000	Weak transcription	NH-A	brain
22	chr1:213251400-213263800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr1:213251600-213259400	Weak transcription	Spleen	Spleen
24	chr1:213251600-213272000	Strong transcription	Monocytes-CD14+_RO01746	blood
25	chr1:213252400-213261000	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr1:213252400-213264400	Weak transcription	H9 Cell Line	embryonic stem cell
27	chr1:213252600-213262200	Strong transcription	Primary monocytes fromperipheralblood	blood
28	chr1:213252600-213297200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr1:213252800-213262000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr1:213252800-213263600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr1:213253000-213263000	Weak transcription	Colonic Mucosa	Colon
32	chr1:213253000-213263200	Weak transcription	Thymus	Thymus
33	chr1:213253000-213271200	Weak transcription	Small Intestine	intestine
34	chr1:213253200-213260800	Weak transcription	Fetal Thymus	thymus
35	chr1:213253200-213262800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr1:213253200-213275600	Weak transcription	Colon Smooth Muscle	Colon
37	chr1:213253200-213277600	Weak transcription	Gastric	stomach
38	chr1:213253600-213262800	Strong transcription	Adipose Nuclei	Adipose
39	chr1:213254000-213258600	Strong transcription	Primary T cells from cord blood	blood
40	chr1:213254000-213260200	Strong transcription	Duodenum Smooth Muscle	Duodenum
41	chr1:213254000-213261000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr1:213254000-213261800	Strong transcription	Fetal Muscle Leg	muscle
43	chr1:213254600-213259400	Strong transcription	Primary B cells from peripheral blood	blood
44	chr1:213254800-213297400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr1:213255000-213259400	Weak transcription	Sigmoid Colon	Sigmoid Colon
46	chr1:213255000-213261000	Weak transcription	HSMMtube	muscle
47	chr1:213255200-213260800	Weak transcription	Dnd41	blood
48	chr1:213255200-213264800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
49	chr1:213255200-213266000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
50	chr1:213255200-213270800	Weak transcription	GM12878-XiMat	blood

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