Variant report

Variant	rs12091457
Chromosome Location	chr1:213221718-213221719
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11120087	1.00[AFR][1000 genomes]
rs11120091	0.80[AFR][1000 genomes]
rs12064585	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs12076890	0.83[AFR][1000 genomes]
rs12079331	1.00[AFR][1000 genomes]
rs12087445	1.00[AFR][1000 genomes]
rs17020062	1.00[YRI][hapmap]
rs17020179	0.90[AFR][1000 genomes]
rs17020314	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008594	chr1:213110654-213236750	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:213215800-213222400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr1:213218600-213221800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr1:213219200-213224000	Weak transcription	Fetal Intestine Large	intestine
4	chr1:213219600-213222800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr1:213220000-213222400	Enhancers	K562	blood
6	chr1:213220000-213223800	Weak transcription	Fetal Intestine Small	intestine
7	chr1:213221600-213222600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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