The 2.0 version of rSNPBase

Variant report

Variant rs12080055
Chromosome Location chr1:180149464-180149465
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:112 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:180124800-180151000 Weak transcription Aorta Aorta
2 chr1:180125200-180150400 Weak transcription Primary T helper 17 cells PMA-I stimulated --
3 chr1:180125600-180159200 Weak transcription Primary T killer memory cells from peripheral blood blood
4 chr1:180126000-180151000 Weak transcription Primary B cells from peripheral blood blood
5 chr1:180126000-180151400 Weak transcription Primary T helper naive cells fromperipheralblood blood
6 chr1:180126200-180152400 Weak transcription Primary T regulatory cells fromperipheralblood blood
7 chr1:180126400-180153800 Weak transcription Primary T helper cells fromperipheralblood blood
8 chr1:180133400-180153200 Weak transcription Primary hematopoietic stem cells blood
9 chr1:180133800-180152800 Weak transcription Primary B cells from cord blood blood
10 chr1:180134000-180167600 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
11 chr1:180134400-180168800 Strong transcription Primary monocytes fromperipheralblood blood
12 chr1:180135000-180169000 Strong transcription Monocytes-CD14+_RO01746 blood
13 chr1:180136200-180167200 Weak transcription Dnd41 blood
14 chr1:180137200-180153200 Weak transcription H9 Cell Line embryonic stem cell
15 chr1:180137200-180155400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
16 chr1:180137400-180157800 Weak transcription HSMMtube muscle
17 chr1:180137600-180151200 Weak transcription Thymus Thymus
18 chr1:180137600-180153000 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
19 chr1:180137800-180150400 Weak transcription HUES48 Cell Line embryonic stem cell
20 chr1:180137800-180151000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
21 chr1:180137800-180153000 Weak transcription Primary T helper cells PMA-I stimulated --
22 chr1:180137800-180159200 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
23 chr1:180138000-180151400 Weak transcription Primary Natural Killer cells fromperipheralblood blood
24 chr1:180138000-180151400 Weak transcription A549 lung
25 chr1:180138000-180153000 Weak transcription iPS-18 Cell Line embryonic stem cell
26 chr1:180138200-180153000 Weak transcription Primary T cells fromperipheralblood blood
27 chr1:180138200-180154200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
28 chr1:180138200-180158000 Weak transcription iPS-15b Cell Line embryonic stem cell
29 chr1:180138200-180172800 Weak transcription ES-I3 Cell Line embryonic stem cell
30 chr1:180138800-180157600 Weak transcription K562 blood
31 chr1:180139000-180151600 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
32 chr1:180139200-180151400 Weak transcription H1 Cell Line embryonic stem cell
33 chr1:180139800-180151000 Weak transcription Colonic Mucosa Colon
34 chr1:180140200-180151000 Weak transcription Placenta Amnion Placenta Amnion
35 chr1:180140200-180167200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
36 chr1:180142600-180157800 Strong transcription Primary neutrophils fromperipheralblood blood
37 chr1:180143200-180153000 Weak transcription Brain Angular Gyrus brain
38 chr1:180143400-180151800 Weak transcription Brain Inferior Temporal Lobe brain
39 chr1:180143400-180171600 Strong transcription Fetal Stomach stomach
40 chr1:180143600-180151200 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
41 chr1:180143600-180151200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
42 chr1:180143800-180150600 Weak transcription Adipose Nuclei Adipose
43 chr1:180143800-180151000 Weak transcription Primary T cells from cord blood blood
44 chr1:180143800-180151000 Weak transcription Duodenum Smooth Muscle Duodenum
45 chr1:180143800-180151400 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
46 chr1:180143800-180156000 Strong transcription IMR90 fetal lung fibroblasts Cell Line lung
47 chr1:180143800-180169000 Weak transcription Small Intestine intestine
48 chr1:180143800-180170000 Strong transcription Osteobl bone
49 chr1:180144000-180150600 Weak transcription Fetal Brain Male brain
50 chr1:180144000-180151000 Weak transcription Skeletal Muscle Male skeletal muscle

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Last update: Aug 31, 2015