Variant report

Variant	rs12102210
Chromosome Location	chr15:57424988-57424989
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:57411738..57417145-chr15:57421254..57425802,5	K562	blood:

Extended variants
information (count: 41 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs1020890	1.00[ASW][hapmap];1.00[AMR][1000 genomes]
rs10518903	0.85[YRI][hapmap];1.00[AMR][1000 genomes]
rs12101548	1.00[AMR][1000 genomes]
rs12102211	0.85[YRI][hapmap]
rs1350906	1.00[AMR][1000 genomes]
rs1381557	1.00[AMR][1000 genomes]
rs1462155	1.00[ASW][hapmap];1.00[AMR][1000 genomes]
rs16977180	1.00[YRI][hapmap]
rs16977183	1.00[ASW][hapmap];0.86[MKK][hapmap];1.00[YRI][hapmap]
rs16977249	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16977287	1.00[AMR][1000 genomes]
rs16977313	1.00[AMR][1000 genomes]
rs16977318	1.00[ASW][hapmap];1.00[AMR][1000 genomes]
rs16977342	1.00[ASW][hapmap];0.85[YRI][hapmap];1.00[AMR][1000 genomes]
rs16977346	1.00[AMR][1000 genomes]
rs16977350	1.00[AMR][1000 genomes]
rs16977357	1.00[AMR][1000 genomes]
rs16977361	1.00[AMR][1000 genomes]
rs16977392	1.00[AMR][1000 genomes]
rs16977394	1.00[AMR][1000 genomes]
rs2011721	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2126399	1.00[ASW][hapmap];1.00[AMR][1000 genomes]
rs2248255	1.00[AMR][1000 genomes]
rs2585077	1.00[AMR][1000 genomes]
rs2591072	1.00[AMR][1000 genomes]
rs2591074	1.00[AMR][1000 genomes]
rs2615216	1.00[AMR][1000 genomes]
rs2615217	1.00[AMR][1000 genomes]
rs2615232	1.00[AMR][1000 genomes]
rs2733197	1.00[AMR][1000 genomes]
rs2733302	1.00[AMR][1000 genomes]
rs28404473	1.00[AMR][1000 genomes]
rs28495648	1.00[AMR][1000 genomes]
rs59762811	1.00[AMR][1000 genomes]
rs60129657	1.00[AMR][1000 genomes]
rs8031933	1.00[AMR][1000 genomes]
rs8037049	1.00[AMR][1000 genomes]
rs8039780	1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042486	chr15:57094598-57505992	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv904251	chr15:57241970-57575916	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv1045611	chr15:57350965-58070807	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12102210	LOC145783	cis	lymphoblastoid	seeQTL

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57386400-57426600	Weak transcription	Primary T cells fromperipheralblood	blood
2	chr15:57387000-57430000	Weak transcription	Placenta	Placenta
3	chr15:57387200-57425400	Weak transcription	Primary T helper cells fromperipheralblood	blood
4	chr15:57387600-57442400	Weak transcription	Fetal Intestine Large	intestine
5	chr15:57403800-57425200	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr15:57404600-57425000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr15:57406800-57425000	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr15:57406800-57425400	Weak transcription	Pancreas	Pancrea
9	chr15:57406800-57425600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr15:57406800-57425600	Weak transcription	Fetal Muscle Trunk	muscle
11	chr15:57406800-57426400	Weak transcription	Colonic Mucosa	Colon
12	chr15:57406800-57426600	Weak transcription	Psoas Muscle	Psoas
13	chr15:57407600-57425600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr15:57410400-57425400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr15:57410600-57425000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr15:57410600-57425400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr15:57410600-57426600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
18	chr15:57410600-57440800	Weak transcription	Ovary	ovary
19	chr15:57410800-57425000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
20	chr15:57410800-57425000	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr15:57410800-57425600	Weak transcription	HMEC	breast
22	chr15:57411000-57428200	Weak transcription	NHLF	lung
23	chr15:57411000-57430400	Weak transcription	NH-A	brain
24	chr15:57411400-57426200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr15:57412400-57425000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
26	chr15:57413600-57425400	Weak transcription	Primary B cells from peripheral blood	blood
27	chr15:57413800-57426600	Weak transcription	Duodenum Mucosa	Duodenum
28	chr15:57413800-57428800	Weak transcription	Gastric	stomach
29	chr15:57414000-57425400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr15:57414000-57425400	Weak transcription	Left Ventricle	heart
31	chr15:57414000-57425400	Weak transcription	Small Intestine	intestine
32	chr15:57415000-57425000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr15:57415000-57427800	Weak transcription	Colon Smooth Muscle	Colon
34	chr15:57415000-57428400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr15:57415000-57438800	Weak transcription	Primary monocytes fromperipheralblood	blood
36	chr15:57415200-57425000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
37	chr15:57415200-57425600	Weak transcription	Aorta	Aorta
38	chr15:57415400-57425200	Weak transcription	NHDF-Ad	bronchial
39	chr15:57415400-57425200	Weak transcription	Osteobl	bone
40	chr15:57415400-57426800	Weak transcription	Muscle Satellite Cultured Cells	--
41	chr15:57415600-57438800	Weak transcription	Monocytes-CD14+_RO01746	blood
42	chr15:57416000-57425000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr15:57416000-57438800	Weak transcription	Primary B cells from cord blood	blood
44	chr15:57416800-57425600	Weak transcription	Liver	Liver
45	chr15:57416800-57430800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr15:57417400-57425400	Weak transcription	Fetal Muscle Leg	muscle
47	chr15:57417400-57426600	Weak transcription	Fetal Stomach	stomach
48	chr15:57417600-57425400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
49	chr15:57417600-57426600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr15:57417800-57425200	Weak transcription	HSMM	muscle

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