Variant report

Variant	rs12102277
Chromosome Location	chr15:92542555-92542556
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:92542461..92544269-chr15:92546881..92548703,2	K562	blood:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12101314	1.00[AMR][1000 genomes]
rs28441123	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28441613	1.00[AMR][1000 genomes]
rs28448579	1.00[AMR][1000 genomes]
rs28452933	1.00[AMR][1000 genomes]
rs28483711	1.00[AMR][1000 genomes]
rs28488133	1.00[AMR][1000 genomes]
rs28510828	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28561596	1.00[AMR][1000 genomes]
rs28620896	1.00[AMR][1000 genomes]
rs28653611	1.00[AMR][1000 genomes]
rs28660220	1.00[AMR][1000 genomes]
rs28690782	1.00[AMR][1000 genomes]
rs28709758	1.00[AMR][1000 genomes]
rs8028318	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8039997	1.00[AMR][1000 genomes]
rs9920708	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048635	chr15:92073294-92557339	Weak transcription Genic enhancers Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv870094	chr15:92367354-92631647	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv534110	chr15:92397220-92592961	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92498200-92555000	Weak transcription	Gastric	stomach
2	chr15:92526200-92544000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr15:92527400-92551400	Weak transcription	Aorta	Aorta
4	chr15:92534200-92543800	Weak transcription	Brain Anterior Caudate	brain
5	chr15:92534200-92544000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr15:92535600-92548000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr15:92536000-92547400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr15:92536400-92548600	Weak transcription	Esophagus	oesophagus
9	chr15:92536600-92544000	Weak transcription	Primary T helper cells fromperipheralblood	blood
10	chr15:92536600-92544000	Weak transcription	Brain Hippocampus Middle	brain
11	chr15:92537800-92547200	Weak transcription	Small Intestine	intestine
12	chr15:92538200-92554800	Weak transcription	Monocytes-CD14+_RO01746	blood
13	chr15:92538400-92544000	Weak transcription	Lung	lung
14	chr15:92538600-92544000	Weak transcription	Left Ventricle	heart
15	chr15:92538600-92544000	Weak transcription	Right Atrium	heart
16	chr15:92538800-92543000	Weak transcription	Brain Substantia Nigra	brain
17	chr15:92538800-92543800	Weak transcription	Brain Cingulate Gyrus	brain
18	chr15:92540200-92543000	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr15:92540600-92543400	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr15:92542200-92542600	Enhancers	iPS-20b Cell Line	embryonic stem cell
21	chr15:92542200-92544000	Weak transcription	Fetal Heart	heart
22	chr15:92542400-92543600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
23	chr15:92542400-92543600	Weak transcription	Fetal Brain Male	brain
24	chr15:92542400-92544000	Weak transcription	ES-I3 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links