Variant report

Variant	rs28660220
Chromosome Location	chr15:92520615-92520616
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12101314	1.00[AMR][1000 genomes]
rs12102277	1.00[AMR][1000 genomes]
rs28441123	1.00[AMR][1000 genomes]
rs28441613	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28448579	1.00[AMR][1000 genomes]
rs28452933	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28483711	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28488133	1.00[AMR][1000 genomes]
rs28510828	1.00[AMR][1000 genomes]
rs28561596	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28620896	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28653611	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28690782	1.00[AMR][1000 genomes]
rs28709758	1.00[AMR][1000 genomes]
rs8028318	1.00[AMR][1000 genomes]
rs8039997	1.00[AMR][1000 genomes]
rs9920708	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048635	chr15:92073294-92557339	Weak transcription Genic enhancers Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv870094	chr15:92367354-92631647	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv534110	chr15:92397220-92592961	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92498200-92555000	Weak transcription	Gastric	stomach
2	chr15:92514000-92523200	Weak transcription	Aorta	Aorta
3	chr15:92516000-92521200	Enhancers	Right Atrium	heart
4	chr15:92518000-92524400	Weak transcription	Spleen	Spleen
5	chr15:92518200-92526000	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr15:92518800-92523800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr15:92518800-92524400	Weak transcription	Ovary	ovary
8	chr15:92518800-92525000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr15:92519000-92523200	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr15:92519000-92525000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr15:92519000-92529000	Weak transcription	Brain Angular Gyrus	brain
12	chr15:92519200-92522600	Weak transcription	Brain Anterior Caudate	brain
13	chr15:92519200-92522600	Weak transcription	Brain Substantia Nigra	brain
14	chr15:92519200-92522800	Weak transcription	Brain Hippocampus Middle	brain
15	chr15:92519200-92523200	Weak transcription	Brain Cingulate Gyrus	brain
16	chr15:92519200-92523200	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr15:92519200-92523200	Weak transcription	Fetal Muscle Leg	muscle
18	chr15:92519200-92523200	Weak transcription	Lung	lung
19	chr15:92519200-92523200	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr15:92519200-92523800	Weak transcription	Psoas Muscle	Psoas
21	chr15:92519200-92524000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr15:92519200-92524000	Weak transcription	Fetal Muscle Trunk	muscle
23	chr15:92519200-92525000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr15:92519200-92525000	Weak transcription	Esophagus	oesophagus
25	chr15:92520400-92521000	Enhancers	Fetal Lung	lung
26	chr15:92520400-92521600	Enhancers	Right Ventricle	heart
27	chr15:92520400-92523000	Enhancers	Fetal Heart	heart
28	chr15:92520600-92523200	Weak transcription	Left Ventricle	heart

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