Variant report

Variant	rs28561596
Chromosome Location	chr15:92517804-92517805
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:92509475..92511121-chr15:92515975..92518365,2	MCF-7	breast:
2	chr15:92515850..92520116-chr15:92521478..92524897,5	MCF-7	breast:
3	chr15:92495221..92497782-chr15:92516330..92519314,2	MCF-7	breast:
4	chr15:92509487..92513090-chr15:92516971..92519490,3	MCF-7	breast:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12101314	1.00[AMR][1000 genomes]
rs12102277	1.00[AMR][1000 genomes]
rs28441123	1.00[AMR][1000 genomes]
rs28441613	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28448579	1.00[AMR][1000 genomes]
rs28452933	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28483711	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28488133	1.00[AMR][1000 genomes]
rs28510828	1.00[AMR][1000 genomes]
rs28620896	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28653611	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28660220	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28690782	1.00[AMR][1000 genomes]
rs28709758	1.00[AMR][1000 genomes]
rs8028318	1.00[AMR][1000 genomes]
rs8039997	1.00[AMR][1000 genomes]
rs9920708	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048635	chr15:92073294-92557339	Weak transcription Genic enhancers Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv870094	chr15:92367354-92631647	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv534110	chr15:92397220-92592961	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92498200-92555000	Weak transcription	Gastric	stomach
2	chr15:92509000-92518400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr15:92509600-92519200	Enhancers	Brain Hippocampus Middle	brain
4	chr15:92513800-92518400	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr15:92513800-92518400	Weak transcription	HSMMtube	muscle
6	chr15:92514000-92518600	Weak transcription	Psoas Muscle	Psoas
7	chr15:92514000-92523200	Weak transcription	Aorta	Aorta
8	chr15:92514200-92518600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr15:92514200-92518600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr15:92515400-92519800	Enhancers	Left Ventricle	heart
11	chr15:92515600-92519200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr15:92515800-92519200	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr15:92515800-92519200	Enhancers	Brain Cingulate Gyrus	brain
14	chr15:92516000-92521200	Enhancers	Right Atrium	heart
15	chr15:92516200-92518200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr15:92516200-92519000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr15:92516200-92519200	Enhancers	Fetal Heart	heart
18	chr15:92516200-92519200	Enhancers	Right Ventricle	heart
19	chr15:92516400-92518600	Enhancers	iPS-20b Cell Line	embryonic stem cell
20	chr15:92516400-92519200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr15:92516400-92519200	Enhancers	Brain Substantia Nigra	brain
22	chr15:92516400-92519200	Enhancers	Lung	lung
23	chr15:92516400-92519200	Enhancers	HMEC	breast
24	chr15:92516600-92518000	Enhancers	Adipose Nuclei	Adipose
25	chr15:92516600-92518800	Enhancers	Ovary	ovary
26	chr15:92516600-92518800	Enhancers	A549	lung
27	chr15:92516600-92519000	Enhancers	Brain Angular Gyrus	brain
28	chr15:92516600-92519200	Enhancers	Brain Anterior Caudate	brain
29	chr15:92516600-92519200	Enhancers	Brain Inferior Temporal Lobe	brain
30	chr15:92516800-92519000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr15:92516800-92519000	Enhancers	Skeletal Muscle Male	skeletal muscle
32	chr15:92516800-92519200	Enhancers	Esophagus	oesophagus
33	chr15:92517000-92518400	Weak transcription	Fetal Muscle Trunk	muscle
34	chr15:92517000-92519000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
35	chr15:92517400-92518000	Weak transcription	Stomach Mucosa	stomach
36	chr15:92517400-92519000	Enhancers	NHEK	skin
37	chr15:92517600-92518000	Enhancers	Sigmoid Colon	Sigmoid Colon
38	chr15:92517600-92518200	Enhancers	Rectal Mucosa Donor 31	rectum
39	chr15:92517600-92518800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
40	chr15:92517600-92518800	Enhancers	Fetal Brain Male	brain
41	chr15:92517600-92519000	Enhancers	Pancreas	Pancrea
42	chr15:92517800-92518000	Enhancers	H1 Cell Line	embryonic stem cell
43	chr15:92517800-92518000	Enhancers	Spleen	Spleen
44	chr15:92517800-92518200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
45	chr15:92517800-92518200	Flanking Active TSS	Hela-S3	cervix

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