Variant report

Variant	rs28441123
Chromosome Location	chr15:92539286-92539287
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12101314	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12102277	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28441613	1.00[AMR][1000 genomes]
rs28448579	1.00[AMR][1000 genomes]
rs28452933	1.00[AMR][1000 genomes]
rs28483711	1.00[AMR][1000 genomes]
rs28488133	1.00[AMR][1000 genomes]
rs28510828	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28561596	1.00[AMR][1000 genomes]
rs28620896	1.00[AMR][1000 genomes]
rs28653611	1.00[AMR][1000 genomes]
rs28660220	1.00[AMR][1000 genomes]
rs28690782	1.00[AMR][1000 genomes]
rs28709758	1.00[AMR][1000 genomes]
rs8028318	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8039997	1.00[AMR][1000 genomes]
rs9920708	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048635	chr15:92073294-92557339	Weak transcription Genic enhancers Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv870094	chr15:92367354-92631647	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv534110	chr15:92397220-92592961	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92498200-92555000	Weak transcription	Gastric	stomach
2	chr15:92526200-92544000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr15:92527400-92551400	Weak transcription	Aorta	Aorta
4	chr15:92534000-92539800	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr15:92534200-92543800	Weak transcription	Brain Anterior Caudate	brain
6	chr15:92534200-92544000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr15:92535600-92548000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr15:92536000-92547400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr15:92536400-92548600	Weak transcription	Esophagus	oesophagus
10	chr15:92536600-92544000	Weak transcription	Primary T helper cells fromperipheralblood	blood
11	chr15:92536600-92544000	Weak transcription	Brain Hippocampus Middle	brain
12	chr15:92537800-92547200	Weak transcription	Small Intestine	intestine
13	chr15:92538200-92554800	Weak transcription	Monocytes-CD14+_RO01746	blood
14	chr15:92538400-92544000	Weak transcription	Lung	lung
15	chr15:92538600-92544000	Weak transcription	Left Ventricle	heart
16	chr15:92538600-92544000	Weak transcription	Right Atrium	heart
17	chr15:92538800-92543000	Weak transcription	Brain Substantia Nigra	brain
18	chr15:92538800-92543800	Weak transcription	Brain Cingulate Gyrus	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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