Variant report

Variant	rs28690782
Chromosome Location	chr15:92508189-92508190
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:92489785..92491813-chr15:92508129..92510292,2	MCF-7	breast:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12101314	1.00[AMR][1000 genomes]
rs12102277	1.00[AMR][1000 genomes]
rs28441123	1.00[AMR][1000 genomes]
rs28441613	1.00[AMR][1000 genomes]
rs28448579	1.00[AMR][1000 genomes]
rs28452933	1.00[AMR][1000 genomes]
rs28483711	1.00[AMR][1000 genomes]
rs28488133	1.00[AMR][1000 genomes]
rs28510828	1.00[AMR][1000 genomes]
rs28561596	1.00[AMR][1000 genomes]
rs28620896	1.00[AMR][1000 genomes]
rs28653611	1.00[AMR][1000 genomes]
rs28660220	1.00[AMR][1000 genomes]
rs28709758	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8028318	1.00[AMR][1000 genomes]
rs8039997	1.00[AMR][1000 genomes]
rs9920708	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048635	chr15:92073294-92557339	Weak transcription Genic enhancers Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv870094	chr15:92367354-92631647	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv534110	chr15:92397220-92592961	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92498200-92555000	Weak transcription	Gastric	stomach
2	chr15:92500200-92509600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr15:92500800-92508600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr15:92500800-92508800	Weak transcription	Ovary	ovary
5	chr15:92504800-92508200	Weak transcription	Brain Substantia Nigra	brain
6	chr15:92505200-92508200	Weak transcription	Primary T helper cells PMA-I stimulated	--
7	chr15:92506000-92508800	Weak transcription	Lung	lung
8	chr15:92506000-92509000	Weak transcription	Placenta	Placenta
9	chr15:92506000-92513600	Weak transcription	Primary T cells fromperipheralblood	blood
10	chr15:92506000-92517600	Weak transcription	Colonic Mucosa	Colon
11	chr15:92506200-92508200	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr15:92506400-92508400	Weak transcription	Adipose Nuclei	Adipose
13	chr15:92506400-92508600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr15:92507200-92508200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr15:92507200-92508400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr15:92507200-92508400	Enhancers	NHEK	skin
17	chr15:92507200-92509000	Enhancers	HMEC	breast
18	chr15:92507400-92508400	Enhancers	Hela-S3	cervix
19	chr15:92507400-92509200	Enhancers	Brain Hippocampus Middle	brain
20	chr15:92507600-92508400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr15:92507600-92510200	Enhancers	Right Ventricle	heart
22	chr15:92507600-92510400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr15:92507600-92512200	Enhancers	Breast Myoepithelial Primary Cells	Breast
24	chr15:92507600-92514400	Enhancers	Fetal Heart	heart
25	chr15:92507600-92516400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
26	chr15:92507800-92508200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr15:92507800-92509800	Enhancers	Esophagus	oesophagus
28	chr15:92507800-92509800	Enhancers	Right Atrium	heart
29	chr15:92507800-92510200	Enhancers	Skeletal Muscle Male	skeletal muscle
30	chr15:92507800-92510400	Enhancers	Left Ventricle	heart
31	chr15:92507800-92513200	Enhancers	Brain Inferior Temporal Lobe	brain
32	chr15:92508000-92508400	Weak transcription	Aorta	Aorta
33	chr15:92508000-92508600	Enhancers	A549	lung
34	chr15:92508000-92508600	Enhancers	Osteobl	bone
35	chr15:92508000-92509000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr15:92508000-92509000	Enhancers	Primary hematopoietic stem cells short term culture	blood
37	chr15:92508000-92509200	Enhancers	Spleen	Spleen
38	chr15:92508000-92514000	Enhancers	Brain Angular Gyrus	brain
39	chr15:92508000-92515000	Enhancers	Brain Cingulate Gyrus	brain

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