The 2.0 version of rSNPBase

Variant report

Variant rs12134372
Chromosome Location chr1:172581580-172581581
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:92 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:172559000-172583400 Weak transcription ES-WA7 Cell Line embryonic stem cell
2 chr1:172560000-172582400 Weak transcription Brain Substantia Nigra brain
3 chr1:172560200-172581800 Weak transcription Hela-S3 cervix
4 chr1:172563800-172582000 Strong transcription Monocytes-CD14+_RO01746 blood
5 chr1:172564400-172582000 Strong transcription Primary Natural Killer cells fromperipheralblood blood
6 chr1:172566600-172581800 Weak transcription Esophagus oesophagus
7 chr1:172566600-172582200 Weak transcription Fetal Intestine Small intestine
8 chr1:172566600-172595800 Weak transcription Primary T helper naive cells from peripheral blood blood
9 chr1:172567400-172582200 Weak transcription iPS-15b Cell Line embryonic stem cell
10 chr1:172570600-172584000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
11 chr1:172570600-172585400 Weak transcription Aorta Aorta
12 chr1:172573400-172582400 Weak transcription Stomach Smooth Muscle stomach
13 chr1:172574400-172582000 Weak transcription Brain Germinal Matrix brain
14 chr1:172576800-172585400 Weak transcription Pancreatic Islets Pancreatic Islet
15 chr1:172577400-172581600 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
16 chr1:172577400-172582000 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
17 chr1:172578800-172582600 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
18 chr1:172579400-172581600 Weak transcription Fetal Adrenal Gland Adrenal Gland
19 chr1:172579400-172582000 Weak transcription Sigmoid Colon Sigmoid Colon
20 chr1:172579400-172585400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
21 chr1:172579600-172585200 Weak transcription ES-I3 Cell Line embryonic stem cell
22 chr1:172579800-172581600 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
23 chr1:172579800-172582400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
24 chr1:172579800-172588600 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
25 chr1:172580000-172581600 Weak transcription Brain Angular Gyrus brain
26 chr1:172580000-172581600 Weak transcription Fetal Kidney kidney
27 chr1:172580000-172581600 Weak transcription Fetal Lung lung
28 chr1:172580000-172581600 Weak transcription Left Ventricle heart
29 chr1:172580000-172581800 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
30 chr1:172580000-172581800 Weak transcription Primary T helper 17 cells PMA-I stimulated --
31 chr1:172580000-172581800 Weak transcription Colon Smooth Muscle Colon
32 chr1:172580000-172581800 Weak transcription Fetal Intestine Large intestine
33 chr1:172580000-172582000 Weak transcription Muscle Satellite Cultured Cells --
34 chr1:172580000-172582200 Weak transcription Fetal Muscle Leg muscle
35 chr1:172580000-172582200 Weak transcription NHLF lung
36 chr1:172580000-172582200 Weak transcription Osteobl bone
37 chr1:172580000-172583000 Weak transcription GM12878-XiMat blood
38 chr1:172580000-172583800 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
39 chr1:172580000-172584200 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
40 chr1:172580000-172584400 Weak transcription HSMMtube muscle
41 chr1:172580000-172585400 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
42 chr1:172580200-172582000 Weak transcription Primary B cells from peripheral blood blood
43 chr1:172580200-172582400 Weak transcription Fetal Muscle Trunk muscle
44 chr1:172580200-172585000 Weak transcription Duodenum Mucosa Duodenum
45 chr1:172580200-172589800 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
46 chr1:172580400-172582000 Weak transcription K562 blood
47 chr1:172580400-172582200 Weak transcription Primary T killer memory cells from peripheral blood blood
48 chr1:172580400-172582200 Weak transcription Brain Anterior Caudate brain
49 chr1:172580400-172582400 Weak transcription Rectal Mucosa Donor 29 rectum
50 chr1:172580400-172582800 Weak transcription H1 Cell Line embryonic stem cell

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Last update: Aug 31, 2015