Variant report

Variant	rs74124263
Chromosome Location	chr1:172601033-172601034
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:172600388..172603451-chr1:172605464..172607588,3	MCF-7	breast:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs12134372	0.90[AFR][1000 genomes]
rs2472551	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2516063	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35344763	1.00[EUR][1000 genomes]
rs55678532	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56001419	1.00[EUR][1000 genomes]
rs56884575	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57117081	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57600271	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58097538	1.00[EUR][1000 genomes]
rs58481917	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58852323	1.00[EUR][1000 genomes]
rs58899638	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60296720	1.00[EUR][1000 genomes]
rs60345777	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60485575	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61692965	1.00[EUR][1000 genomes]
rs6683359	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73032190	1.00[EUR][1000 genomes]
rs73034011	1.00[EUR][1000 genomes]
rs74124226	1.00[AMR][1000 genomes]
rs74124228	1.00[AMR][1000 genomes]
rs74124231	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74124232	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74124235	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74124236	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74124239	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74124241	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74124242	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74124244	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74124245	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74124248	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74124250	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74124251	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74124253	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74124255	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74124256	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74124257	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74124258	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74124260	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74124262	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7526530	1.00[EUR][1000 genomes]
rs7538218	1.00[EUR][1000 genomes]

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172597200-172605800	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr1:172597600-172605200	Weak transcription	Primary T helper cells fromperipheralblood	blood
3	chr1:172598200-172605400	Weak transcription	Primary T cells fromperipheralblood	blood
4	chr1:172598800-172605800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr1:172599000-172605600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr1:172599200-172601200	Weak transcription	Primary T cells from cord blood	blood
7	chr1:172600200-172601600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr1:172600200-172605600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr1:172600400-172602800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr1:172600400-172605600	Weak transcription	Osteobl	bone
11	chr1:172600400-172605800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr1:172600400-172606400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr1:172600400-172606400	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr1:172600600-172605400	Weak transcription	Primary T helper cells PMA-I stimulated	--
15	chr1:172600600-172605600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
16	chr1:172600800-172601400	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr1:172601000-172601400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

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