Variant report

Variant	rs73032190
Chromosome Location	chr1:172506177-172506178
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:172503645..172508691-chr1:172518673..172522927,5	MCF-7	breast:
2	chr1:172408347..172411338-chr1:172505750..172507919,2	K562	blood:
3	chr1:172426591..172429561-chr1:172505407..172507168,2	K562	blood:
4	chr1:172504989..172507379-chr1:172513184..172515018,2	MCF-7	breast:
5	chr1:172505452..172508334-chr1:172537227..172538951,2	K562	blood:
6	chr1:172418269..172420773-chr1:172505670..172507696,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000180999	Chromatin interaction
ENSG00000094975	Chromatin interaction

rs_ID	r²[population]
rs2472551	1.00[EUR][1000 genomes]
rs2516063	1.00[EUR][1000 genomes]
rs55678532	1.00[EUR][1000 genomes]
rs56001419	1.00[EUR][1000 genomes]
rs56884575	1.00[EUR][1000 genomes]
rs57117081	1.00[EUR][1000 genomes]
rs57600271	1.00[EUR][1000 genomes]
rs58097538	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58481917	1.00[EUR][1000 genomes]
rs58852323	1.00[EUR][1000 genomes]
rs58899638	1.00[EUR][1000 genomes]
rs60296720	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60345777	1.00[EUR][1000 genomes]
rs60485575	1.00[EUR][1000 genomes]
rs61692965	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6683359	1.00[EUR][1000 genomes]
rs73034011	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74124231	1.00[EUR][1000 genomes]
rs74124232	1.00[EUR][1000 genomes]
rs74124235	1.00[EUR][1000 genomes]
rs74124236	1.00[EUR][1000 genomes]
rs74124239	1.00[EUR][1000 genomes]
rs74124241	1.00[EUR][1000 genomes]
rs74124242	1.00[EUR][1000 genomes]
rs74124244	1.00[EUR][1000 genomes]
rs74124245	1.00[EUR][1000 genomes]
rs74124248	1.00[EUR][1000 genomes]
rs74124250	1.00[EUR][1000 genomes]
rs74124251	1.00[EUR][1000 genomes]
rs74124253	1.00[EUR][1000 genomes]
rs74124255	1.00[EUR][1000 genomes]
rs74124256	1.00[EUR][1000 genomes]
rs74124257	1.00[EUR][1000 genomes]
rs74124258	1.00[EUR][1000 genomes]
rs74124260	1.00[EUR][1000 genomes]
rs74124262	1.00[EUR][1000 genomes]
rs74124263	1.00[EUR][1000 genomes]
rs7526530	1.00[EUR][1000 genomes]
rs7538218	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172503200-172509200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr1:172503400-172511200	Weak transcription	Spleen	Spleen
3	chr1:172503400-172511400	Weak transcription	Gastric	stomach
4	chr1:172503400-172528600	Weak transcription	Aorta	Aorta
5	chr1:172503400-172528600	Weak transcription	Lung	lung
6	chr1:172503600-172506200	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr1:172503600-172507000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr1:172503600-172507000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr1:172503600-172507000	Weak transcription	Ovary	ovary
10	chr1:172503600-172507000	Weak transcription	Pancreas	Pancrea
11	chr1:172503600-172508200	Enhancers	Primary T helper naive cells from peripheral blood	blood
12	chr1:172503600-172511400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr1:172503600-172511400	Weak transcription	Primary T cells fromperipheralblood	blood
14	chr1:172503600-172513600	Weak transcription	Psoas Muscle	Psoas
15	chr1:172503600-172520200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr1:172503600-172531600	Weak transcription	Esophagus	oesophagus
17	chr1:172503800-172507000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr1:172503800-172507000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr1:172503800-172507400	Enhancers	Primary neutrophils fromperipheralblood	blood
20	chr1:172503800-172507600	Enhancers	Colon Smooth Muscle	Colon
21	chr1:172503800-172508600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
22	chr1:172503800-172509400	Weak transcription	HSMMtube	muscle
23	chr1:172503800-172529000	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr1:172503800-172534200	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr1:172504000-172506600	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr1:172504000-172506600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr1:172504000-172506600	Weak transcription	Right Ventricle	heart
28	chr1:172504000-172507000	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr1:172504000-172507000	Weak transcription	Skeletal Muscle Female	skeletal muscle
30	chr1:172504000-172511600	Weak transcription	Stomach Smooth Muscle	stomach
31	chr1:172504000-172524400	Weak transcription	HSMM	muscle
32	chr1:172504200-172506200	Enhancers	Duodenum Mucosa	Duodenum
33	chr1:172504200-172506200	Enhancers	Fetal Heart	heart
34	chr1:172504200-172507200	Enhancers	Small Intestine	intestine
35	chr1:172504200-172508000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
36	chr1:172504200-172515200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
37	chr1:172504200-172527000	Weak transcription	Rectal Mucosa Donor 29	rectum
38	chr1:172504400-172507400	Enhancers	NHEK	skin
39	chr1:172504400-172519400	Enhancers	Primary T helper cells fromperipheralblood	blood
40	chr1:172504600-172507200	Enhancers	Brain Germinal Matrix	brain
41	chr1:172504600-172507200	Enhancers	Osteobl	bone
42	chr1:172504600-172507400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr1:172504600-172508800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
44	chr1:172504800-172506200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
45	chr1:172504800-172506200	Enhancers	HepG2	liver
46	chr1:172504800-172506400	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
47	chr1:172504800-172506800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr1:172504800-172507000	Weak transcription	Brain Cingulate Gyrus	brain
49	chr1:172504800-172507000	Weak transcription	Right Atrium	heart
50	chr1:172504800-172507000	Weak transcription	NHDF-Ad	bronchial

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