Variant report

Variant	rs74124260
Chromosome Location	chr1:172595428-172595429
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:172593455..172595873-chr1:172596177..172598039,2	MCF-7	breast:
2	chr1:172595240..172596815-chr1:172605161..172606970,2	K562	blood:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs12134372	0.83[AFR][1000 genomes]
rs2472551	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2516063	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35344763	1.00[EUR][1000 genomes]
rs55678532	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56001419	1.00[EUR][1000 genomes]
rs56884575	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57117081	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57600271	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58097538	1.00[EUR][1000 genomes]
rs58481917	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58852323	1.00[EUR][1000 genomes]
rs58899638	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60296720	1.00[EUR][1000 genomes]
rs60345777	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60485575	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61692965	1.00[EUR][1000 genomes]
rs6683359	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73032190	1.00[EUR][1000 genomes]
rs73034011	1.00[EUR][1000 genomes]
rs74124226	1.00[AMR][1000 genomes]
rs74124228	1.00[AMR][1000 genomes]
rs74124231	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74124232	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74124235	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74124236	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74124239	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74124241	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74124242	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74124244	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74124245	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74124248	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74124250	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74124251	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74124253	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74124255	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74124256	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74124257	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74124258	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74124262	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74124263	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7526530	1.00[EUR][1000 genomes]
rs7538218	1.00[EUR][1000 genomes]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172566600-172595800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr1:172589600-172598600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr1:172594800-172597200	Enhancers	Placenta Amnion	Placenta Amnion
4	chr1:172595200-172598800	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr1:172595400-172598600	Weak transcription	Primary monocytes fromperipheralblood	blood

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