The 2.0 version of rSNPBase

Variant report

Variant rs56884575
Chromosome Location chr1:172563610-172563611
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:125 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:172519400-172571600 Weak transcription Brain Angular Gyrus brain
2 chr1:172535600-172569200 Weak transcription Gastric stomach
3 chr1:172536000-172565400 Weak transcription Ovary ovary
4 chr1:172536000-172565600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
5 chr1:172536000-172566000 Weak transcription Aorta Aorta
6 chr1:172537400-172565600 Weak transcription Lung lung
7 chr1:172540200-172581000 Weak transcription Colonic Mucosa Colon
8 chr1:172540400-172565600 Weak transcription Esophagus oesophagus
9 chr1:172540400-172565800 Weak transcription Pancreas Pancrea
10 chr1:172540600-172565400 Weak transcription Fetal Intestine Small intestine
11 chr1:172541600-172565400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
12 chr1:172548400-172565600 Weak transcription Rectal Smooth Muscle rectum
13 chr1:172551400-172565200 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
14 chr1:172556000-172565600 Weak transcription Spleen Spleen
15 chr1:172556400-172565400 Strong transcription HUES6 Cell Line embryonic stem cell
16 chr1:172557400-172581200 Weak transcription Fetal Heart heart
17 chr1:172557600-172574600 Weak transcription Stomach Mucosa stomach
18 chr1:172558400-172565600 Weak transcription Pancreatic Islets Pancreatic Islet
19 chr1:172558400-172565800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
20 chr1:172559000-172565200 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
21 chr1:172559000-172583400 Weak transcription ES-WA7 Cell Line embryonic stem cell
22 chr1:172559200-172565000 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
23 chr1:172559200-172565600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
24 chr1:172559200-172566000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
25 chr1:172559400-172571600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
26 chr1:172559800-172565400 Weak transcription Primary mononuclear cells fromperipheralblood Blood
27 chr1:172559800-172565400 Weak transcription Fetal Stomach stomach
28 chr1:172559800-172573400 Weak transcription Fetal Brain Male brain
29 chr1:172560000-172563800 Weak transcription Fetal Adrenal Gland Adrenal Gland
30 chr1:172560000-172565400 Weak transcription Left Ventricle heart
31 chr1:172560000-172565400 Weak transcription Right Ventricle heart
32 chr1:172560000-172565400 Weak transcription Thymus Thymus
33 chr1:172560000-172565600 Weak transcription Sigmoid Colon Sigmoid Colon
34 chr1:172560000-172566200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
35 chr1:172560000-172566800 Weak transcription NHLF lung
36 chr1:172560000-172569600 Weak transcription Skeletal Muscle Male skeletal muscle
37 chr1:172560000-172578400 Weak transcription HSMMtube muscle
38 chr1:172560000-172580600 Weak transcription Small Intestine intestine
39 chr1:172560000-172581200 Weak transcription Psoas Muscle Psoas
40 chr1:172560000-172582400 Weak transcription Brain Substantia Nigra brain
41 chr1:172560200-172563800 Weak transcription Primary T helper 17 cells PMA-I stimulated --
42 chr1:172560200-172563800 Weak transcription Skeletal Muscle Female skeletal muscle
43 chr1:172560200-172564400 Weak transcription Duodenum Smooth Muscle Duodenum
44 chr1:172560200-172564600 Weak transcription ES-I3 Cell Line embryonic stem cell
45 chr1:172560200-172565400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
46 chr1:172560200-172565400 Weak transcription iPS-15b Cell Line embryonic stem cell
47 chr1:172560200-172565400 Weak transcription Primary T helper naive cells from peripheral blood blood
48 chr1:172560200-172565800 Weak transcription Brain Hippocampus Middle brain
49 chr1:172560200-172566200 Weak transcription Colon Smooth Muscle Colon
50 chr1:172560200-172566600 Weak transcription K562 blood

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Last update: Aug 31, 2015