Variant report

Variant	rs1214371
Chromosome Location	chr3:100038426-100038427
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:100036672..100038736-chr3:100043578..100046026,2	K562	blood:
2	chr3:100036136..100038823-chr3:100040287..100043748,3	MCF-7	breast:
3	chr3:100038329..100040344-chr3:100052546..100054102,2	K562	blood:

Variant related genes	Relation type
ENSG00000114021	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1036770	0.84[ASN][1000 genomes]
rs1609481	0.81[ASN][1000 genomes]
rs2029162	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2316246	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs277637	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs277655	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs277656	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs277660	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34547730	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35805111	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35939236	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs36013739	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3772698	0.84[ASN][1000 genomes]
rs384528	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3862050	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4345098	0.88[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs4552390	0.84[ASN][1000 genomes]
rs4928118	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4928169	0.85[ASN][1000 genomes]
rs6804963	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7638503	0.81[ASN][1000 genomes]
rs967608	0.84[ASN][1000 genomes]
rs9863237	0.88[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs9968163	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916476	chr3:99478229-100124625	Active TSS Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
2	nsv1003924	chr3:99933762-100112690	Strong transcription Weak transcription Enhancers Genic enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv869690	chr3:99984442-100054949	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99980600-100053200	Weak transcription	Gastric	stomach
2	chr3:99994400-100040800	Weak transcription	Esophagus	oesophagus
3	chr3:99996000-100052800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr3:99996000-100053000	Weak transcription	Small Intestine	intestine
5	chr3:100007000-100045000	Weak transcription	Lung	lung
6	chr3:100008600-100053000	Weak transcription	Aorta	Aorta
7	chr3:100009200-100045000	Strong transcription	Primary monocytes fromperipheralblood	blood
8	chr3:100014600-100042200	Weak transcription	Fetal Brain Male	brain
9	chr3:100015400-100053200	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr3:100019000-100043200	Weak transcription	Brain Angular Gyrus	brain
11	chr3:100019600-100053000	Weak transcription	Colonic Mucosa	Colon
12	chr3:100020000-100038600	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr3:100020600-100053000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
14	chr3:100020600-100053000	Weak transcription	Hela-S3	cervix
15	chr3:100021800-100052800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr3:100021800-100053000	Weak transcription	Psoas Muscle	Psoas
17	chr3:100022000-100047600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr3:100022000-100052800	Weak transcription	Pancreas	Pancrea
19	chr3:100025800-100038800	Weak transcription	Brain Cingulate Gyrus	brain
20	chr3:100025800-100053000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr3:100025800-100053000	Weak transcription	Right Ventricle	heart
22	chr3:100026000-100038600	Weak transcription	HMEC	breast
23	chr3:100026000-100052600	Weak transcription	Brain Hippocampus Middle	brain
24	chr3:100026000-100052800	Weak transcription	Thymus	Thymus
25	chr3:100026200-100038600	Weak transcription	Primary hematopoietic stem cells	blood
26	chr3:100026400-100038600	Weak transcription	Brain Germinal Matrix	brain
27	chr3:100026400-100038600	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr3:100026400-100038800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr3:100026400-100038800	Weak transcription	K562	blood
30	chr3:100026400-100045600	Weak transcription	HSMMtube	muscle
31	chr3:100026400-100052800	Weak transcription	NHEK	skin
32	chr3:100026400-100053000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr3:100026600-100048600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
34	chr3:100026600-100052800	Weak transcription	Stomach Smooth Muscle	stomach
35	chr3:100029400-100038600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
36	chr3:100029400-100041200	Weak transcription	Fetal Kidney	kidney
37	chr3:100029600-100053000	Weak transcription	Brain Substantia Nigra	brain
38	chr3:100029800-100038600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr3:100029800-100038600	Weak transcription	Brain Anterior Caudate	brain
40	chr3:100029800-100039800	Weak transcription	Fetal Lung	lung
41	chr3:100030200-100049800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
42	chr3:100030200-100053000	Weak transcription	Fetal Brain Female	brain
43	chr3:100030800-100038600	Weak transcription	Primary B cells from cord blood	blood
44	chr3:100030800-100038600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
45	chr3:100031000-100038600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr3:100031000-100038600	Weak transcription	HUVEC	blood vessel
47	chr3:100031000-100053000	Weak transcription	Rectal Smooth Muscle	rectum
48	chr3:100031200-100038600	Weak transcription	Primary T cells from cord blood	blood
49	chr3:100031200-100038800	Weak transcription	NHLF	lung
50	chr3:100031200-100051200	Weak transcription	H1 Cell Line	embryonic stem cell

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