Variant report

Variant	rs3862050
Chromosome Location	chr3:99967960-99967961
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:99932243..99933755-chr3:99967811..99970321,2	K562	blood:
2	chr3:99787458..99788080-chr3:99967948..99968860,2	MCF-7	breast:
3	chr3:99967620..99969559-chr3:99977899..99979628,2	K562	blood:
4	chr3:99962966..99964488-chr3:99966320..99968492,2	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10936157	0.95[CHB][hapmap];0.81[ASN][1000 genomes]
rs1214371	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1609481	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs2028494	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs2029162	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2316246	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs277637	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs277655	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs277656	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs277660	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34547730	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35805111	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35939236	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs36013739	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3772698	1.00[CHB][hapmap]
rs384528	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4345098	0.92[ASN][1000 genomes]
rs4552390	0.95[CHB][hapmap]
rs4928118	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4928119	0.95[CHB][hapmap];0.81[ASN][1000 genomes]
rs4928169	1.00[CHB][hapmap]
rs57048357	1.00[AMR][1000 genomes]
rs6804963	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.83[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7638503	0.85[ASN][1000 genomes]
rs967608	0.95[CHB][hapmap]
rs9810704	0.81[AMR][1000 genomes]
rs9863237	0.90[ASN][1000 genomes]
rs9968163	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916476	chr3:99478229-100124625	Active TSS Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
2	nsv1003924	chr3:99933762-100112690	Strong transcription Weak transcription Enhancers Genic enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99959800-99972400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr3:99964600-99978600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr3:99964800-99979000	Weak transcription	Aorta	Aorta
4	chr3:99965000-99972800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr3:99965200-99972600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr3:99965200-99978800	Weak transcription	NH-A	brain
7	chr3:99965600-99978800	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr3:99966200-99968200	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr3:99966200-99972200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr3:99966600-99979000	Weak transcription	Gastric	stomach
11	chr3:99967800-99968000	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr3:99967800-99968400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr3:99967800-99968600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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