Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11915985	0.85[ASN][1000 genomes]
rs1214371	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2029162	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2316246	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs277637	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs277655	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs277656	0.87[AMR][1000 genomes]
rs277660	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35805111	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35939236	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs36013739	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs384528	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3862050	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4345098	0.86[ASN][1000 genomes]
rs4928118	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57048357	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6802765	0.85[ASN][1000 genomes]
rs6804963	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs931332	0.83[ASN][1000 genomes]
rs9810704	0.81[AMR][1000 genomes]
rs9863237	0.84[ASN][1000 genomes]
rs9968163	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817478	chr3:99474086-99955548	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv916476	chr3:99478229-100124625	Active TSS Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
3	nsv1003924	chr3:99933762-100112690	Strong transcription Weak transcription Enhancers Genic enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99946000-99950400	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr3:99946400-99956600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr3:99946600-99950400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr3:99948400-99950200	Weak transcription	NH-A	brain
5	chr3:99949600-99950000	Enhancers	HSMMtube	muscle
6	chr3:99949800-99950200	Enhancers	NHEK	skin
7	chr3:99949800-99950600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr3:99949800-99951000	Enhancers	Osteobl	bone

Quick Search: