Variant report
| Variant | rs35939236 |
|---|---|
| Chromosome Location | chr3:99957275-99957276 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs11915985 | 0.83[ASN][1000 genomes] |
| rs1214371 | 0.92[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs1609481 | 0.83[ASN][1000 genomes] |
| rs2028494 | 0.80[ASN][1000 genomes] |
| rs2029162 | 1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs2316246 | 1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs277637 | 0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs277655 | 0.92[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs277656 | 0.87[AMR][1000 genomes] |
| rs277660 | 0.87[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs34547730 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs35805111 | 1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs36013739 | 1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs384528 | 0.92[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs3862050 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs4345098 | 0.89[ASN][1000 genomes] |
| rs4928118 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs57048357 | 1.00[AMR][1000 genomes] |
| rs6802765 | 0.83[ASN][1000 genomes] |
| rs6804963 | 1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs7638503 | 0.83[ASN][1000 genomes] |
| rs931332 | 0.81[ASN][1000 genomes] |
| rs9810704 | 0.81[AMR][1000 genomes] |
| rs9863237 | 0.87[ASN][1000 genomes] |
| rs9968163 | 0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv916476 | chr3:99478229-100124625 | Active TSS Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 46 gene(s) | inside rSNPs | diseases |
| 2 | nsv1003924 | chr3:99933762-100112690 | Strong transcription Weak transcription Enhancers Genic enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 17 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:99956200-99966400 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
