Variant report

Variant	rs36013739
Chromosome Location	chr3:99933972-99933973
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1214371	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2029162	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2316246	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs277637	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs277655	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs277656	0.87[AMR][1000 genomes]
rs277660	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34547730	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35805111	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35939236	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs384528	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3862050	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4928118	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs57048357	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6804963	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9810704	0.81[AMR][1000 genomes]
rs9968163	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817478	chr3:99474086-99955548	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv916476	chr3:99478229-100124625	Active TSS Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
3	nsv1003924	chr3:99933762-100112690	Strong transcription Weak transcription Enhancers Genic enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99929600-99935200	Weak transcription	Aorta	Aorta
2	chr3:99929800-99935200	Weak transcription	HSMMtube	muscle
3	chr3:99929800-99935400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr3:99930000-99935200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr3:99930600-99935000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr3:99930600-99935200	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr3:99930600-99937400	Weak transcription	Psoas Muscle	Psoas
8	chr3:99930800-99935200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr3:99931200-99938000	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr3:99932800-99934000	Enhancers	HepG2	liver
11	chr3:99933000-99935200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr3:99933200-99935200	Weak transcription	NH-A	brain
13	chr3:99933600-99934800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr3:99933800-99934000	Enhancers	iPS-20b Cell Line	embryonic stem cell
15	chr3:99933800-99934000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
16	chr3:99933800-99934600	Enhancers	iPS-15b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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