Variant report
| Variant | rs12146057 |
|---|---|
| Chromosome Location | chr1:215419622-215419623 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs10864155 | 1.00[ASN][1000 genomes] |
| rs12118235 | 1.00[ASN][1000 genomes] |
| rs12118508 | 1.00[ASN][1000 genomes] |
| rs12118830 | 1.00[ASN][1000 genomes] |
| rs12121939 | 1.00[ASN][1000 genomes] |
| rs12127285 | 1.00[ASN][1000 genomes] |
| rs12132201 | 1.00[ASN][1000 genomes] |
| rs12141564 | 1.00[ASN][1000 genomes] |
| rs1339404 | 1.00[ASN][1000 genomes] |
| rs1339407 | 1.00[ASN][1000 genomes] |
| rs17024348 | 1.00[ASN][1000 genomes] |
| rs17024370 | 1.00[ASN][1000 genomes] |
| rs17606405 | 1.00[ASN][1000 genomes] |
| rs34999070 | 1.00[ASN][1000 genomes] |
| rs56720553 | 1.00[ASN][1000 genomes] |
| rs57440894 | 1.00[ASN][1000 genomes] |
| rs74140868 | 1.00[ASN][1000 genomes] |
| rs74140948 | 1.00[ASN][1000 genomes] |
| rs74140950 | 1.00[ASN][1000 genomes] |
| rs7543935 | 1.00[ASN][1000 genomes] |
| rs7551303 | 1.00[ASN][1000 genomes] |
| rs7553910 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv873169 | chr1:215264486-215453286 | Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS | Chromatin interactive regionmiRNA target site | n/a | inside rSNPs | diseases |
| 2 | nsv873170 | chr1:215367248-215440975 | Weak transcription Genic enhancers Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats | Chromatin interactive regionmiRNA target site | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:215413400-215420200 | Weak transcription | Bone Marrow Derived Cultured Mesenchymal Stem Cells | Bone marrow |
