Variant report

Variant	rs12146979
Chromosome Location	chr14:81780859-81780860
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:81685596..81687723-chr14:81779481..81781884,2	MCF-7	breast:
2	chr14:81686550..81688217-chr14:81779859..81782471,2	K562	blood:
3	chr14:81779689..81782584-chr14:81913814..81916244,2	MCF-7	breast:
4	chr14:81780831..81784247-chr14:81787674..81790536,4	MCF-7	breast:
5	chr14:81684496..81687014-chr14:81780787..81782724,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000165417	Chromatin interaction
ENSG00000140022	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10138868	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10141989	0.81[ASN][1000 genomes]
rs10142173	0.88[ASN][1000 genomes]
rs10149489	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10873336	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11626709	0.88[ASN][1000 genomes]
rs11626733	0.81[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs12588160	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12588234	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1885604	0.88[ASN][1000 genomes]
rs1957542	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1957543	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1957544	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1957545	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1957548	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2146244	0.87[ASN][1000 genomes]
rs2371574	0.88[ASN][1000 genomes]
rs28501387	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28622938	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4903976	0.88[ASN][1000 genomes]
rs4903977	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4903979	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4903980	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs55744181	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6574638	0.88[ASN][1000 genomes]
rs6574639	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6574640	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6574641	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6574642	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6574643	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6574644	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6574645	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7145964	0.87[ASN][1000 genomes]
rs7146488	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7153097	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7153538	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7153613	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7154309	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7155930	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7156146	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7156251	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7160788	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8003051	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8006006	0.88[ASN][1000 genomes]
rs8010545	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8021083	0.88[ASN][1000 genomes]

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81769400-81781000	Weak transcription	Psoas Muscle	Psoas
2	chr14:81771000-81785400	Weak transcription	Fetal Intestine Large	intestine
3	chr14:81771800-81785200	Weak transcription	Fetal Intestine Small	intestine
4	chr14:81773600-81790600	Weak transcription	K562	blood
5	chr14:81775600-81783000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr14:81776000-81783000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr14:81777200-81781400	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr14:81777200-81781600	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr14:81777200-81783000	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr14:81777200-81784000	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr14:81777200-81784200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr14:81777400-81781200	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr14:81777400-81783000	Enhancers	H1 Cell Line	embryonic stem cell
14	chr14:81777600-81781400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr14:81777600-81782800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr14:81778000-81781400	Enhancers	Fetal Brain Female	brain
17	chr14:81778200-81782200	Enhancers	Fetal Brain Male	brain
18	chr14:81778400-81781000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr14:81778400-81810800	Weak transcription	Primary hematopoietic stem cells	blood
20	chr14:81778600-81781200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr14:81778600-81782600	Weak transcription	Fetal Lung	lung
22	chr14:81778600-81783000	Enhancers	HUES6 Cell Line	embryonic stem cell
23	chr14:81778600-81786000	Weak transcription	Stomach Mucosa	stomach
24	chr14:81778600-81786400	Weak transcription	Adipose Nuclei	Adipose
25	chr14:81778600-81789200	Weak transcription	Esophagus	oesophagus
26	chr14:81778800-81781200	Weak transcription	Spleen	Spleen
27	chr14:81779000-81781000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr14:81779000-81782800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr14:81779400-81781400	Weak transcription	Brain Anterior Caudate	brain
30	chr14:81779400-81781800	Weak transcription	Placenta	Placenta
31	chr14:81779600-81782800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr14:81779600-81783600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr14:81779600-81787000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
34	chr14:81779600-81788200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr14:81779800-81782800	Enhancers	HMEC	breast
36	chr14:81779800-81783200	Enhancers	NHEK	skin
37	chr14:81780200-81781000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr14:81780200-81781000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr14:81780200-81781000	Enhancers	Skeletal Muscle Male	skeletal muscle
40	chr14:81780200-81781200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr14:81780200-81782400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr14:81780200-81782800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr14:81780200-81784200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
44	chr14:81780400-81781200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr14:81780400-81783000	Enhancers	HUES48 Cell Line	embryonic stem cell
46	chr14:81780400-81783000	Enhancers	Cortex derived primary cultured neurospheres	brain
47	chr14:81780400-81786400	Weak transcription	Sigmoid Colon	Sigmoid Colon
48	chr14:81780600-81781000	Weak transcription	Brain Hippocampus Middle	brain
49	chr14:81780600-81781800	Weak transcription	Primary monocytes fromperipheralblood	blood
50	chr14:81780600-81782600	Enhancers	Brain Substantia Nigra	brain

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