Variant report

Variant	rs8021083
Chromosome Location	chr14:81783957-81783958
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:81778237..81779870-chr14:81783264..81785390,2	MCF-7	breast:
2	chr14:81780831..81784247-chr14:81787674..81790536,4	MCF-7	breast:
3	chr14:81782728..81784713-chr14:81789234..81791560,2	MCF-7	breast:
4	chr14:81783553..81785269-chr14:81899174..81901080,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000140022	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10138868	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10141989	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10142173	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10149489	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10873336	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11626709	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11626733	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12146979	0.88[ASN][1000 genomes]
rs12588160	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12588234	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1885604	0.94[ASN][1000 genomes]
rs1957542	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1957543	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1957544	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1957545	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1957548	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2146244	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2371574	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28501387	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28622938	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4903976	0.94[ASN][1000 genomes]
rs4903977	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4903979	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4903980	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55744181	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6574638	0.93[ASN][1000 genomes]
rs6574639	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6574640	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6574641	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6574642	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6574643	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6574644	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6574645	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7145964	0.93[ASN][1000 genomes]
rs7146488	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7153097	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7153538	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7153613	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7154309	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7155930	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7156146	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7156251	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7160788	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8003051	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8006006	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8010545	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs919378	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81771000-81785400	Weak transcription	Fetal Intestine Large	intestine
2	chr14:81771800-81785200	Weak transcription	Fetal Intestine Small	intestine
3	chr14:81773600-81790600	Weak transcription	K562	blood
4	chr14:81777200-81784000	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr14:81777200-81784200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr14:81778400-81810800	Weak transcription	Primary hematopoietic stem cells	blood
7	chr14:81778600-81786000	Weak transcription	Stomach Mucosa	stomach
8	chr14:81778600-81786400	Weak transcription	Adipose Nuclei	Adipose
9	chr14:81778600-81789200	Weak transcription	Esophagus	oesophagus
10	chr14:81779600-81787000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr14:81779600-81788200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr14:81780200-81784200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr14:81780400-81786400	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr14:81780600-81790400	Weak transcription	Fetal Muscle Trunk	muscle
15	chr14:81781000-81798400	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr14:81781200-81792400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr14:81781800-81784000	Enhancers	iPS-18 Cell Line	embryonic stem cell
18	chr14:81782000-81785400	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr14:81782000-81787000	Weak transcription	Spleen	Spleen
20	chr14:81782200-81784000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr14:81782200-81790200	Weak transcription	Placenta	Placenta
22	chr14:81782200-81790600	Weak transcription	Psoas Muscle	Psoas
23	chr14:81782400-81788400	Weak transcription	Brain Cingulate Gyrus	brain
24	chr14:81782400-81789000	Weak transcription	Brain Hippocampus Middle	brain
25	chr14:81782600-81790200	Weak transcription	Fetal Muscle Leg	muscle
26	chr14:81782800-81784000	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr14:81782800-81784200	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr14:81782800-81788800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr14:81783000-81784000	Enhancers	iPS-20b Cell Line	embryonic stem cell
30	chr14:81783000-81786200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr14:81783000-81787400	Weak transcription	H9 Cell Line	embryonic stem cell
32	chr14:81783000-81788000	Weak transcription	H1 Cell Line	embryonic stem cell
33	chr14:81783000-81788000	Weak transcription	HUES48 Cell Line	embryonic stem cell
34	chr14:81783000-81788800	Weak transcription	Fetal Kidney	kidney
35	chr14:81783000-81789000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
36	chr14:81783000-81789000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
37	chr14:81783400-81784000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr14:81783400-81784000	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
39	chr14:81783400-81786600	Strong transcription	HMEC	breast
40	chr14:81783600-81785400	Strong transcription	NHEK	skin
41	chr14:81783600-81786600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr14:81783600-81787000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr14:81783600-81788000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr14:81783600-81788600	Weak transcription	HUES64 Cell Line	embryonic stem cell
45	chr14:81783800-81784000	Enhancers	HepG2	liver

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